Lonchura striata (white-rumped munia): 110474346
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Entry
110474346 CDS
T05897
Symbol
XRN2
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03008
Ribosome biogenesis in eukaryotes
lsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110474346 (XRN2)
09123 Folding, sorting and degradation
03018 RNA degradation
110474346 (XRN2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110474346 (XRN2)
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110474346 (XRN2)
03009 Ribosome biogenesis [BR:
lsr03009
]
110474346 (XRN2)
03016 Transfer RNA biogenesis [BR:
lsr03016
]
110474346 (XRN2)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110474346 (XRN2)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
110474346 (XRN2)
Ribosome biogenesis [BR:
lsr03009
]
Eukaryotic type
Pre-60S particles
RNases
110474346 (XRN2)
Transfer RNA biogenesis [BR:
lsr03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110474346 (XRN2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
Motif
Other DBs
NCBI-GeneID:
110474346
NCBI-ProteinID:
XP_021393384
UniProt:
A0A218UIY2
LinkDB
All DBs
Position
3:complement(27711140..27743846)
Genome browser
AA seq
949 aa
AA seq
DB search
MGVPAFFRWLSRKYPSIIVNCVEEKAKECNGVKVPIDTSKPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFR
ASKEGMEAAEEKQKIRQEILAKGGYLPPEEVKERFDSNCITPGTEFMDNLAKCLRYYIAD
RLNSSPGWKNLTVILSDASAPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPKPCALCNQMGHEVKDCQGLPREKQGKHDQFADTLPVSEQE
FIFIRLCVLREYLERELTMASLPFTFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKNVVHKTGGYLTESGFVNLQRVQMIMLAVGEVEDSIFKKRKDDDDNFKRRQKE
KRKRLKRDQPSFIPGGQFSPQALGNRSSPQAICNPRQAAFEMRMHDRQNSTTSASPNTSL
TPDGSPSLGGGIKRKPEDSDSEPEPEDNIRLWETGWKQRYYKNKFDVDASDEKFRRKVVQ
SYVEGLCWVLRYYYQGCASWNWYYPFHYAPFASDFEGIADMPSDFEKGSKPFKPLEQLMG
VFPAASGNFLPPTWRKLMTDPESSIIDFYPEDFAIDLNGKKYAWQGVALLPFVDERRLRA
ALEEVYPDLTPEESRRNSLGSDVLFVGKHHPLCDFIVEQYKTKNTEAVDIPPELCHGIQG
KLTLNNNAVLPDQVVQSPVPMLRDLTQNSAVSISFKDPQFAEDFVFKATVLPGAKKPAPV
LKPGDWEKANNDGRPWRPQLGFNRDRKPMHLDQSVFRTLGHTMPRDRGMPGMYPNAVPLG
AYSSPYARPLMGSQQQIPKLLSNLRPQESWRGPTPLFQQTPQRTSGAAPLLAWNRMLPSP
NQFQPAQYQGLGPMGYPQRPEDRMDRGRQVYGPGRPYPLPPPAGRYSWN
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccggccttcttccgctggctcagccgcaagtacccctccattatcgtcaac
tgcgtcgaggagaaggccaaagagtgcaatggtgtcaaggtccccattgacacaagcaag
cccaaccccaacgaggtggagttcgacaacctctacctggacatgaacggcatcattcac
ccctgcacacacccagaggacaaaccagcacccaaaaatgaagatgagatgatggtggcg
atattcgagtatatcgaccggatcttcaacattgtgagaccaaggagactcctttacatg
gccatagatggagtggccccgcgtgccaaaatgaatcaacagcggtccaggagattcaga
gcctcaaaggagggcatggaagctgctgaggagaagcaaaaaatccgacaagaaattctg
gccaaaggtggctatctgcctccagaggaggtgaaggagaggtttgacagcaactgtatc
acccctggaactgagttcatggacaatcttgctaaatgcctccgctattacatcgctgac
cgcttgaacagcagcccaggctggaagaacctgacagttattttgtcagatgccagtgct
cctggtgaaggggagcataaaattatggattacatcaggagacaaagagctcaacctaac
cacgacccaaacactcaccactgtctgtgtggggctgatgctgatctgatcatgcttggc
ttagctacacacgaaccgaacttcaccatcattagggaagaattcaaaccaaacaaaccc
aagccatgtgctctctgtaaccagatggggcatgaggttaaggattgccaaggcctgccc
agagagaaacaaggaaagcacgatcagtttgccgacaccctgccggtctcagagcaagag
ttcatcttcatccgcctatgtgtcctgcgagagtatttggagagagagctcaccatggcc
agcttgcctttcacttttgattttgaaaggagcgttgatgactgggtcttcatgtgcttc
tttgtggggaatgacttcctccctcatctgccatctctagagatcagggagggagcaatc
gatcgcttggttaacatctataaaaatgtggtgcacaaaactgggggctacctgactgaa
agtgggtttgtgaacctgcagcgggtccagatgatcatgctggctgttggggaagttgaa
gacagtattttcaaaaagaggaaagatgacgatgataactttaaaagacggcaaaaagaa
aaaaggaagagattgaagagggatcagccttcctttattcctggtggtcagttttcccct
caggccctgggaaatcgatccagtcctcaagcaatctgtaaccctcgacaagctgccttt
gagatgaggatgcacgacaggcagaactcaacaacttcagcatctccaaacaccagcctg
actcctgatggtagcccatccttaggaggaggaattaagcggaaacccgaggacagtgac
agtgaacctgagccggaggataatatcaggttgtgggaaaccggttggaagcagcgctat
tataaaaacaaattcgatgtggatgcatcagatgagaaattccgtcgcaaggttgtgcag
tcctacgtggaagggctttgctgggttctcagatattattatcagggctgtgcatcctgg
aactggtattacccttttcactatgctccctttgcctcagacttcgagggcattgcagat
atgccttcagactttgagaagggctccaaaccgtttaagcctcttgaacagctgatgggg
gtgttcccggccgccagtggaaacttcctgccgccaacgtggaggaaactcatgacagat
ccagaatcaagcatcattgacttctaccctgaagactttgctattgatctgaatgggaag
aaatatgcttggcaaggtgtagcattgttgccctttgtggatgagcgacgcctcagagct
gccctggaggaagtgtaccctgacctcactcctgaagagagcaggaggaacagccttggc
agtgatgttctctttgttgggaagcaccatccactctgtgacttcattgtggagcagtac
aagaccaagaacacagaggcagtggacatcccaccggagctgtgccatggcatccaggga
aagctcaccttgaacaacaatgccgtccttccagatcaggtggtgcagtctcctgttccc
atgctgcgggatctgacacagaactctgcagtcagcatctcattcaaagatccacaattt
gctgaagactttgttttcaaggctacagtgttacctggagcaaagaaacctgctccagtt
ctgaagccaggagactgggaaaaagccaacaatgatggcaggccttggagaccacagctt
ggctttaacagggacaggaaaccaatgcatttggaccagtcagtgttcagaaccttgggg
cacacgatgccgagggacaggggcatgccagggatgtaccccaacgctgtgccactcgga
gcctacagcagcccctacgccagacccctcatgggcagccagcagcagatccccaaactg
ctgtcaaatcttcggccccaggagtcctggagaggtcccacacccttgttccagcagaca
ccacaaagaacctctggagctgctcctctcctcgcctggaaccgcatgctgccatcccca
aaccagttccagccagctcagtaccaggggctggggcccatgggatacccacagagaccc
gaggaccgcatggacaggggcagacaggtgtatggccccgggaggccctacccgctccca
cctcctgcaggaaggtacagctggaattag
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