Lonchura striata (white-rumped munia): 110474407
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Entry
110474407 CDS
T05897
Symbol
CLSTN1
Name
(RefSeq) calsyntenin-1 isoform X1
KO
K22659
calsyntenin 1
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lsr04515
]
110474407 (CLSTN1)
Cell adhesion molecules [BR:
lsr04515
]
Cadherins
Cadherin related
110474407 (CLSTN1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLSTN_C
Ig_CLSTN
Cadherin
Laminin_G_3
CDC45
Laminin_G_2
Toxin_R_bind_N
Glyco_hydro_16
EphA2_TM
V_ATPase_I
PFF1_TM
Cadherin_C_2
SID-1_RNA_chan
Zip
Piezo_TM1-24
TMEM132_C
Motif
Other DBs
NCBI-GeneID:
110474407
NCBI-ProteinID:
XP_021393467
UniProt:
A0A218UHR4
LinkDB
All DBs
Position
21:complement(5105678..5135354)
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AA seq
969 aa
AA seq
DB search
MPAPAARLLLAALLCGAAAAARVNKHKPWIETTYHGIVTENDNTVLLDPPLIALDKDAPL
RFAESFEVTVTKEGEICGFKIHGQNVPFEAVVVDKSTGEGIIRSKEKLDCELQKDYTFTI
QAYDCGKGPDGANAKKSHKATVHIQVNDVNEYAPVFKEKSYKATVIEGKRYDNILKVEAV
DADCSPQFSQICSYEIVTPDVPFAIDKDGYIKNTEKLSYGKEHQYKLTVTAYDCGKKRAA
EDVLVKISIKPTCKPGWQGWSKRIEYEPGTGSLALFPGMHLETCDEPITSVEATVELETN
HIGKGCDRDTYSEKSIHRLCGAASGTAELLPPPSSAANWTVGLPTDNGHDSDQVFEFNGT
QAVKIPDGVVTVNLKEPFMISVWMRHGPGTKEKETILCNSDKTDMNRHHYTLYVHNCRLV
FLLRQDPSEAKSYKPAEFHWKLNQVCDKEWHHYVVNVEFPAVSLYVDGVSYDPFPVTEDY
PLHPSKIETQLVVGACWQEYAGSENDNETVPETSAGGELRMAQFFRGSLAGLMIRSGKLE
NKKVIDCLYTCKEGLDLQMADGVGKGVKLHMNPSQSTLTIEGDDIDRVDKAMQHISYLNS
RQFPTPGIRRLKITSTVKCFNEEACVSIPSVEGYVMVLQPEEPKISLSGINHFARSASEF
ESSEGVSLFPELRIISTITREVEPEGDGDEDPTVQESLVSEEIMHNLDMCEVTVLGEELN
QEQESLEIDMTRLQQKGIEMSSSNLGMIITGVDTMANYEEVLHLIRYRNWHTASLFDRKF
KLLCSELNGRYVSNEFQVEVNVIHTASPVEHANHIAAQPQFIHPVHHSFVDLSGHNLANP
HPFSVVPSTATVVIVVCVSFLVFMIILGVFRIRAAHQRTMRDQDSGKENEMDWDDSALTI
TVNPMETYEDQHSSEEEEEEEEESEDGEEDDITSAESESSEEEEGEQEEDQQNVNRQQQL
EWDDSTLSY
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgccggcccccgccgcccgcctgctgctcgccgcgctgctctgcggagcggccgcggcc
gctcgagttaacaagcataagccatggattgaaacaacctatcatggcatagttacagaa
aatgacaacacagtgctcttggaccctcctctaatagccctggacaaagatgcacctctg
cgttttgcagagagttttgaggtgacagtcaccaaagaaggtgagatttgtggatttaaa
atccacgggcaaaatgttccctttgaagcagtggtagtggataaatccactggtgaggga
ataatacgctctaaggaaaagcttgactgtgagctgcagaaggactacacgttcaccatc
caggcctacgactgtgggaagggaccagatggggcaaacgcaaaaaaatcccacaaggcc
acagtccacatccaggtgaacgacgtgaacgagtacgccccggtgttcaaggagaagtcc
tacaaggccacggtcattgagggcaagaggtacgacaacatcctcaaggtggaggccgtg
gatgcagattgctccccccagttcagccagatctgcagctacgagatcgtgaccccggac
gtgccctttgccatcgacaaggacggttatataaaaaacacagaaaagttaagctatggt
aaagaacaccagtataaactgacagtaacagcctatgactgtgggaagaagagagctgct
gaggatgtgttggttaaaattagcattaagcctacgtgcaagcctggctggcaaggttgg
agcaaaagaatagaatatgagcctggcactggttctttggctctattccctgggatgcat
ttggagacgtgtgatgagccaataacctcagtggaagcaacggtggagctagaaaccaac
catattggtaaaggctgtgacagagacacctactctgagaaatccatccacaggctctgt
ggtgctgcttctggcacagctgagctgctcccccctccaagcagtgctgctaactggact
gtggggctgcccacggataatggccatgacagcgaccaggtcttcgagtttaatggcaca
caggctgtgaagattccagatggtgttgtcacagtcaatctgaaagagcccttcatgatt
tcagtatggatgaggcatgggcctggaaccaaagagaaagagacaattctgtgcaattca
gacaagacagatatgaaccggcaccactacaccctctacgtgcacaactgccgcctggtc
ttcctgctccgccaggacccctccgaggccaagagctacaaacctgccgagttccactgg
aagctcaatcaggtgtgtgacaaagagtggcaccactatgttgtcaacgttgaatttccc
gcggtgtctctttacgtggatggggtttcctacgatcctttcccagtcactgaggattac
ccactccacccttccaagatagaaacacagctggtggttggagcatgttggcaagaatat
gcaggaagtgaaaatgacaatgaaactgtgcccgagacctctgcaggtggtgaactgcgc
atggctcagtttttccgaggcagtttggcagggctgatgatccgttctggtaaactggag
aacaagaaggtgattgattgcctctacacttgcaaagaggggctggatttgcagatggct
gatggtgttggcaaaggtgtgaagctccacatgaacccgagccagtcaacgctgaccata
gaaggggatgacattgacagggtggacaaggccatgcagcacatttcctacctgaactcc
cgccagttcccaacacctggcattcggaggctgaagatcaccagcactgtcaagtgtttc
aatgaagaggcctgtgtctccattccctctgtggaggggtatgtcatggtcttgcagcca
gaggagccaaaaatcagcctgagtggcatcaaccactttgcccgctctgcctcagagttc
gagagctccgagggcgtttccctcttcccggagcttcgcatcatcagcaccatcacccgg
gaggtggagcccgagggagatggggatgaagatcctacagtccaagagtctttggtatct
gaagagatcatgcacaacctggatatgtgtgaggtgacagtgctgggagaggagctaaat
caggaacaagagagcctggagattgacatgacacgattacagcagaaaggcattgagatg
agcagttccaacctgggcatgataatcacaggggtggacaccatggctaactacgaggag
gttctgcacctgatccgctacaggaactggcacacggcgtctctgttcgacaggaagttc
aagctgctctgctccgagctcaacggccgctacgtcagcaacgagttccaggtggaggtg
aatgttatccacacagccagcccagtggaacatgccaatcacattgctgcacagccacag
ttcattcacccagtgcatcattcctttgttgatctctctggtcacaacttggcaaaccct
catcccttttcagtggtccccagcacagccaccgtggtgatcgtggtgtgtgtcagcttc
ctggtgttcatgatcatcctgggtgtgttccggatccgcgccgcgcaccagagaaccatg
cgggaccaggactcgggcaaggagaacgagatggactgggacgactctgctctgaccatc
actgtgaaccccatggagacttatgaggatcaacacagcagtgaagaggaggaggaggag
gaagaagaaagtgaagacggagaagaagatgacatcactagtgcagagtctgaaagcagt
gaggaggaagagggagagcaggaggaggaccaacagaatgttaacagacagcagcagctg
gaatgggatgactctaccctcagttattga
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