Lonchura striata (white-rumped munia): 110474411
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Entry
110474411 CDS
T05897
Symbol
UBE4B
Name
(RefSeq) ubiquitin conjugation factor E4 B isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04120
Ubiquitin mediated proteolysis
lsr04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
110474411 (UBE4B)
04120 Ubiquitin mediated proteolysis
110474411 (UBE4B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110474411 (UBE4B)
Enzymes [BR:
lsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110474411 (UBE4B)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
U-box type E3
110474411 (UBE4B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
110474411
NCBI-ProteinID:
XP_021393480
UniProt:
A0A218UHZ6
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All DBs
Position
21:5193298..5227537
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AA seq
1172 aa
AA seq
DB search
MEELSADEIRRRRLARLAGGSSSQPSTPLTSPQRETPPGPPGAAPAPGPSHSLGLHVHSI
TPATSPIGASGVAHRSQSSEGVSSLSSSPSNSLETQSQSLSRSQSMDIDSVSCEKSMSQV
DVDSGIENMEVDENDRREKRSLTDKEPLSGSEVSEEQALQLVCKIFRVSWKDRDRDVIFL
NSLSAQFKQNPKEVFSDFKDLIGQILMEVLMMSTQARDENPFASLTATSQPIAAAARSPD
RSLILNMGSNPGSSPMFCNVGSFGSSSLSSVGGSGSSSVSDSCSDHFTIENCKETEMLNY
LIECFDRVGIEERKAPKMCSQPTVSQLLSNIRSQCISHAALVLQGSLTQPRSLQQQSLLV
PYMLCRNLPFGFIQELVRTTYQDEEVFKQIFIPILQGLAVASKECSLDSDNFKYPLMALC
ELCEIKFGKTHPMCSLVVSLPLWLPKSLSPGAGRELQRLSYLGAFFSLSVFAEDDNKVVE
KYFSGPAITLENTRVVSQSLQHYLELARQELFKILHSILLNGDTREAALSYMAAVVNANM
KKAQMQTDDRLVSTDGFMLNFLWVLQQLSTKIKLETVDPMYIFHPRCRIELPTDETRVKA
TMEEVAAWTAELYRDPSPFSEPKFPTECFFLTLHAHHLSILPSCRRYIRRLRAIRELNRT
VEDLKNNESQWKDSPLATRHREMLKRCKTQLKKLVRCKACADAGLLDENFLRRCLNFYGM
VIQLMLRILDPAYPNVKLPLTPEVPKVFASLPEFYVEDVAEFLFFIVQYAPQVLYEPCTQ
DIVMFLVVMLCNQNYIRNPYLVAKLVEVMFMTNPAVQPRTQKFFEMIENHPLSTKLLVPS
LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNIAHHGTFMEEFNSGKQFVRYINM
LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDLLPRDQQQARQSQLAQDERVSRSYLAL
ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK
KLLDQLTDIYLQLDCARFAKAIADDQRSYSKELFEEVISKMRKAGIKSTIAIEKFKLLAE
KVEEIVAKNARAEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSSTDP
FNRQTLTENMLEPVPELKEQIQAWMRDKQNDH
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggaggagctgagcgcggacgagatccggcggaggcgcctggcgcggctggcggggggc
tcctcgtcccagcccagcaccccgctgacgtccccgcagagagagaccccgccggggccg
ccgggcgcagcccccgcgccggggccctcgcacagcctgggcctccacgtgcacagcatc
accccagctacctctcccatcggggcatcaggagtagcccaccgaagccagagcagcgaa
ggagtgagttccctcagcagttctccatccaacagccttgaaacccaatctcagtccctc
tctcggtctcagagcatggacattgatagtgtctcctgtgagaaaagtatgtcccaggta
gatgtggattcaggaattgagaacatggaggttgatgagaacgatcgcagagagaaacgg
agtctgacggacaaggaacctctgtcggggtcggaagtgtcggaggaacaagctctgcag
ctggtctgtaagatcttcagagtctcttggaaggaccgagacagagatgtcattttcctg
aattcactttctgcccagttcaagcagaacccaaaggaagtgttttcagattttaaggac
ttgatcgggcagattttgatggaagtgctgatgatgtccacccaggcaagggatgagaac
ccctttgccagcctgacagccacctcccaacccattgctgcagctgcccgctctcctgac
agaagcctgatcttaaatatgggctccaaccctggaagcagccccatgttctgtaatgtg
ggctcctttggttccagctcgttgtccagtgtgggaggctctggcagctcgagtgtttcc
gattcctgcagtgaccacttcaccattgaaaactgtaaggagacagagatgctgaactac
ctcattgagtgttttgacagggttggaatagaggagagaaaagcaccaaagatgtgtagc
cagccaacagttagccagttactgagcaacataagatcccagtgcatttcacatgctgct
ttggtgctacagggatccttaacacaaccaaggtcattgcagcagcagtctcttctggta
ccatatatgctatgtaggaatctcccatttggcttcattcaagagttggtgagaacaact
taccaggatgaagaggtgttcaaacagatctttattcccatcttacaaggcctggctgtg
gcttccaaagagtgctccctcgatagtgacaattttaaatatccccttatggcactatgc
gaactttgtgaaatcaagtttgggaaaacgcaccccatgtgcagtttggttgtctctttg
cccttgtggttgcctaaatctttaagcccaggtgcaggaagagaactgcaaagactttcc
taccttggagccttcttcagtctgtctgtctttgctgaagatgataacaaagtagttgaa
aagtacttctcagggcctgccattactcttgagaacacccgggttgttagccagtccttg
caacattacctggaattagcaaggcaagagctgttcaagatcctgcacagtatcctgctg
aacggggacacccgggaggcagctctcagctacatggcagctgtggtcaatgccaacatg
aaaaaggcccagatgcagacagacgatcgtttggtgtccacagatggcttcatgctcaac
ttcctctgggtactgcagcaactgagtacgaagataaagctggaaacggttgatcccatg
tacatattccatcccaggtgtcgaatcgagcttcccacagatgagacaagagtgaaagca
acaatggaggaggttgcagcctggactgctgagctttacagggacccgtctccattttct
gagccgaagttcccaacggaatgtttcttcctcaccctgcacgcgcaccacctgtccatc
ctgcccagctgccgtcgctacatccgcaggctgcgcgccatcagggagctcaacaggact
gttgaagatttgaaaaacaatgaaagtcagtggaaggattctcctctggccaccaggcat
cgagagatgctgaaacggtgcaagacacagctcaagaaactggtgaggtgtaaggcttgt
gcagatgctggtttgctggatgaaaacttcctcaggagatgcctgaatttctatggcatg
gtgattcagctgatgcttcgcattcttgaccctgcctatcccaacgtaaaattgccttta
actcctgaggttccgaaagtatttgcatcattgccagagttttatgtagaagatgttgct
gaatttttattttttattgtacaatatgctcctcaggtgctgtatgagccctgtactcag
gacatagtgatgttccttgttgtgatgctgtgcaaccagaactacatccgaaatccttat
ttagtagccaagctggtggaagtgatgttcatgacaaatccagctgttcagccccggaca
cagaagttctttgaaatgattgaaaatcaccctctctccactaaattgttagtcccctcc
ttgatgaagttttacacagatgtggagcatactggagccactagcgagttctatgacaag
tttacaatccgctaccacatcagcaccattttcaaaagcctctggcagaatatagctcac
catggtacatttatggaagagttcaactctgggaagcagtttgtgcgctacatcaacatg
ctgataaatgacacaactttcttgctggatgagagtctggagtccctaaaacgtatccat
gaagtgcaagaggagatgaagaataaagagcaatgggacctgctgcccagggatcagcag
caggcccggcagtcgcagctggctcaggatgagcgcgtgtcccgttcatatctcgccctg
gcaacagaaactgttgatatgttccatatccttaccaagcaggtccaaaagccttttctc
agacctgaacttggaccacgactggctgctatgttgaactttaacttacagcaactgtgt
ggccccaagtgccgtgacctgaaagttgaaaacccagagaaatacgggtttgaaccaaag
aagctgttggaccaactgactgacatttatctgcagctggattgtgctcgctttgctaaa
gcaattgctgatgatcagaggtcctacagtaaagagctctttgaggaggttatctccaag
atgaggaaggctggaatcaagtctaccatagcaatagagaaattcaaactgctggcagag
aaagtggaggaaatcgttgccaagaacgcccgtgcagagattgattacagcgatgctcca
gatgaattcagagatccactgatggacactctgatgaccgaccccgtgcggctgccctcg
ggcaccatcatggacaggtcaatcatcctgaggcacctgctgaactcctccacggatccg
ttcaaccggcagacgctgacggagaatatgctggaaccagtgccagaacttaaagagcaa
atccaagcctggatgagagacaagcagaatgaccattaa
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