Lonchura striata (white-rumped munia): 110474528
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Entry
110474528 CDS
T05897
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110474528 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110474528 (PARN)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110474528 (PARN)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110474528 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
Motif
Other DBs
NCBI-GeneID:
110474528
NCBI-ProteinID:
XP_021393673
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All DBs
Position
14:3964293..4010104
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AA seq
638 aa
AA seq
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MEVIRSNFKDNLNKVYEAIEESDFLAIDGEFSGISDGPSVSALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDETEEKYIMKSFNFYIFPKPFNRNSPDVKFVCQSSSIDFLANQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQANGAGSLSYISPNSTKCPVTIPEDQKKF
VEKVVEQIEDLLKNEESESLELEPCTGFQRKLIYQTLSWKYPKGIHVETLESDKKERYIV
ITKVDEEERKRREQQKQAKEQEELNDAVGFSRVVHAIANSGKLVIGHNMLLDVMHTIHQF
YCPLPDDLSEFKEVTSCVFPRLLDTKLMASTQPFKEIINNTSLAELEKRLKEVPFSPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANFLGSFLSPPKNHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTS
AFVSLSQPEQVQIAVNTSRYAESYRIQTYAEYVEKKHEEKQAKRKCTEDSWKEMERKRLK
TQCTPYVSQSRYYCVNSFTGTSTVGKRSMSPIEEETVSDDMEETEGHDPENDQADSCAES
LPDGKKRAKKLKKIKTEQVPAGNLTTSSTGIFEVPETW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgatcaggagcaactttaaggataacctaaataaagtgtatgaagccattgaa
gagtcggacttcctggccatcgacggagagttttcagggatcagtgatgggccttcagtt
agtgcattaacaaatggctttgacactccagaagaaaggtatcagaaacttaaaaagcat
tccatggattttttgctctttcagtttggcctttgcacttttaaatatgatgagacagaa
gaaaagtatataatgaagtcatttaatttctatatttttccaaaaccctttaacagaaat
tcaccagatgtcaagtttgtctgtcagagttcaagtatagattttttagcaaaccaagga
tttgattttaataaagtttttcgcaatggaattccgtatttaaatcaggaagaggagaga
cagctaagggaacagtatgatgaaaaacgttctcaagccaatggtgcaggatctctgtca
tacatttctcctaattccacaaagtgccctgtaacaattcctgaagatcagaaaaaattt
gtagagaaagtagtggaacagatagaagacttactaaagaatgaagaaagtgaaagtttg
gaactggagccatgtacaggatttcaaaggaaattaatttatcagaccttgagctggaag
tatccaaaaggtatccacgtggaaactctggagtcagataagaaggagaggtatattgtt
attactaaggtagatgaagaggaacgaaaaagaagagagcagcagaaacaagcaaaagaa
caggaagaattgaatgatgctgtgggattttccagagttgttcatgccattgctaattct
ggcaagcttgttattgggcacaacatgctgctggatgttatgcacaccatacatcagttc
tattgccccttacctgatgacctaagtgagttcaaggaagtaacatcatgtgtctttccc
cggttactggatactaaactgatggcaagtacgcaaccttttaaggagatcattaataat
acatcacttgcagaactggaaaagcgtttaaaagaggttccattcagccctcctaaagtt
gaaagtgcagaaggatttccaagttatgatacagcatctgaacaactccatgaagcagga
tatgatgcttacattactggactgtgcttcatttccatggctaatttcctaggttcattc
ctcagtcctccgaaaaaccatgtgtctgctagatcaaaactcattgaacctttttttaac
aagctgtttcttatgagagtaatggacataccatatctcaatttggaaggaccagacttg
cagcccaaacgagatcacgttcttcatgttacttttcccaaagagtggaagactagtgac
ctataccagcttttcagtgcctttggtaacattcaggtttcgtggattgatgatacatca
gcatttgtctcattgagccagccagagcaagtacaaatagctgtaaacaccagccggtat
gctgaaagttataggatccagacatatgcagaatatgtggagaaaaaacatgaagaaaaa
caggccaagagaaaatgtacagaagatagttggaaggagatggagaggaagaggttaaaa
acccagtgcacaccttacgtttcccagagtcgatactactgtgttaacagttttacaggt
accagtacagtggggaagagaagcatgagtcctattgaggaagaaactgtttctgatgat
atggaagagacagaaggccatgatccagaaaatgatcaggcagactcctgtgcagaatcc
cttccagatggtaagaagagagcaaagaagttgaaaaagatcaagacagaacaagttcca
gcaggaaacctcacaactagttccactggaatttttgaggtacctgaaacatggtag
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