Lonchura striata (white-rumped munia): 110474544
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Entry
110474544 CDS
T05897
Symbol
CIITA
Name
(RefSeq) MHC class II transactivator
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr05164
Influenza A
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
110474544 (CIITA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
lsr01001
]
110474544 (CIITA)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
lsr04054
]
110474544 (CIITA)
Enzymes [BR:
lsr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
110474544 (CIITA)
Protein kinases [BR:
lsr01001
]
Serine/threonine kinases: Other
TAF1 family
110474544 (CIITA)
Pattern recognition receptors [BR:
lsr04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
110474544 (CIITA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
LRR_9
NB-ARC
nSTAND_NTPase5
RsgA_GTPase
NPHP3_N
AAA_19
Motif
Other DBs
NCBI-GeneID:
110474544
NCBI-ProteinID:
XP_021393698
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All DBs
Position
14:3578935..3604522
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AA seq
1124 aa
AA seq
DB search
MDSVFVPENGYLDLLHSDIDPLHLCTFFDTKSSGDEEGDFSTDLEVEANNYEQLNNVDFP
YENGDGFYPCCNTTDAYAKIAELVEYVLKDQQEKQVEDTFAGNLILDDIAAENTEKFPDI
KIQSCLKRTFLGSAAESYCDASEPKYKKIVEVPAASAGNGSFFAMPLNSHPVNCTSLSNQ
YMSCSVPAAHGLERSLIIPGLSEPLTTECQPVSVKGYQENLGLAGPPQQIFNFVLENGTS
DVIVYPVLTSSMETFMSPSFPVNLCAQHTYATSPGIPDAATDRLAYLEEFQEVQDSIISS
EEHFKRPEQVETFCSSLKDYFRDTCKSVTMEREVNLDHLFIDRTLVQSQTETKTGKNSAK
AMEKELVTCSLQEKEKTAIDRSQIFQIPQRKDLDTKVIVVLGKAGMGKSILIQKICQDWS
NGEFSQFEFVFWFDCKQISLPEKQYSLKELLLEFFVKPQEGSKEIFEYMLQNPDKILLIF
DGFKGLHDHENFSRCSASQPEKDLCSIKELLSGLIQKKMLNGCTLLFTARPKDKLYQYVS
KVDKTIEIVGFSPQQRELYITKYFEESLYCDSALKLIKECEYLFSHCYSPVMCRFVCFLC
ETVLEMGENSLPSTLTEVFLKFFKQKIMFMQTDATTTQNQESLATLARVAWCLGEKHQST
MKSDLIPSKEVKEFALKYGFFLPFALPRRSDSEEEEFGSTFSDFVIQNFLCALHLLLAEE
LKDKNLTKYLSFLSKKKKPYNWLDLMPRFLAGLMFLQDDPSFCSLSNEDEKQSTKKQKTL
LKYIRRLQINTLCPERLLELLCCVYETQNNYLLQHVALRLEPELSFLGIVLTPPDVHVLH
SVLKRSRKEFSLDLRNSSIDMQGLQALVSLRNVTSFRASLSDTVRLWKSLEQTKDYELLK
ASTEKFVLDPFKAKTMKDIRDLSDLVEMQEKMMNCVQEASGCTSYEIPAIRNLRKLEFAL
GPACGLQGLLKLVKILAAFPSLQHLDLDALSENGIGDEGAKSLSEVFPTLPSLETLNLSQ
NKITDVGAENLATALPSLSSLKTLSLYNNNICDFGAENLAKVLPAMTSLRVLDVQYNKIT
GVGAQQLTDSLRKCPHMKNLVMWNPTIPYGVLEHLHQLDSRISV
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggattcagtatttgtgcctgaaaatggctaccttgatttactgcacagtgatattgat
ccattgcatctgtgtactttctttgatactaagtcatctggagatgaagaaggtgacttc
tctacagatcttgaagttgaggccaacaactatgaacagttaaataatgtggatttccca
tatgaaaatggagatgggttctacccctgttgcaacaccacagatgcttatgctaaaata
gctgaattagtagaatatgtgctcaaggatcagcaggagaagcaggtcgaagacactttt
gcagggaaccttattttggatgacattgctgctgaaaacactgagaaatttcctgacata
aagatccagtcatgtcttaaacgaactttcttaggctctgcagcagagagttactgtgat
gcttcagagcccaaatataagaaaattgtggaagtccctgcagcttctgcagggaatggc
agtttctttgcaatgcctctcaacagccacccagtgaactgcacctctctaagtaaccag
tacatgtcctgttctgttcctgctgcccatgggctggaaagaagcctcataattcctgga
ttgtctgaacctttgaccacagagtgccaaccagtcagtgtgaaagggtaccaagagaat
ctaggcttggcaggtcctcctcagcagatatttaactttgttcttgaaaatggcacatct
gatgttatagtatatccagtgctgacatcttccatggaaacattcatgtctccaagtttt
ccagttaatttatgtgctcaacatacgtatgccacaagccccggaattccagatgcagca
acagacagattagcatatttagaggaatttcaagaagttcaagattccataatttcttct
gaagaacatttcaaaagaccagagcaagtggaaactttctgttcatcccttaaggattat
ttccgagacacctgcaaatctgtgaccatggagcgggaagtaaatctggatcacctgttc
attgataggacacttgttcaaagtcaaactgaaaccaagactggaaagaatagtgcaaaa
gcaatggaaaaggagctggtaacctgcagcctgcaagagaaggaaaagacagccattgat
agaagccaaatatttcaaatcccacagcgtaaagacttagacactaaagtgattgtggtt
ctgggaaaagcaggaatgggcaaaagcattctcattcagaagatctgccaggactggtcc
aatggagaattttctcagtttgaatttgtattttggtttgactgcaaacaaataagtttg
cctgagaagcaatacagcctgaaggagttgcttcttgaattttttgtaaaacctcaagag
ggaagcaaagagatctttgagtatatgctgcaaaatcctgataaaatccttctgattttt
gatggttttaaaggattgcatgatcatgagaatttttctcgttgctcagccagccagcct
gaaaaggatttgtgcagtataaaggagctgctctcaggactcatccaaaaaaagatgctc
aatggctgtactttattatttacagcaagaccaaaagacaaactgtaccagtatgtgtcc
aaagtggataagactattgaaattgtaggattttctcctcagcagagagaattatacata
accaaatactttgaagaatcgctctattgtgatagtgcactgaaattaatcaaagagtgt
gagtacttgttcagtcattgttacagtcctgttatgtgtagatttgtttgttttctctgt
gagacagtgcttgaaatgggagagaacagtcttccttcaactcttactgaagtcttcctg
aaattttttaagcagaagatcatgtttatgcaaacagatgctacaaccacacaaaatcaa
gagagtcttgctaccctagctcgtgtagcctggtgtcttggagaaaagcaccaaagcacc
atgaaaagtgatcttattccttctaaggaagttaaagagtttgctctgaagtatgggttt
ttcctgccatttgcattgcccagacgttcagatagtgaagaagaggaatttgggagcaca
ttctctgattttgtcattcagaatttcttgtgtgcacttcaccttttgttagcagaagag
ctcaaggataaaaatctaacaaagtacttgtcttttctatcgaagaagaaaaaaccttat
aactggttagatttaatgcctcgatttttggctggtttgatgtttctccaggatgacccc
tccttctgctctctttcaaatgaggatgaaaaacagtcaaccaagaagcagaagacactc
ttgaaatacatcagaaggctgcagattaatactctctgtccagagaggttgctggagctt
ttatgttgtgtttatgaaacacagaacaattatcttctgcagcatgtggccttgagactt
gagccagagttgtcttttctgggcatagttcttacaccacctgatgtccatgtactgcac
tctgttttgaaaaggtcaagaaaagagttttccttggatttgcggaacagcagcattgac
atgcaagggctgcaagccttggtcagcctaaggaatgtgacatcattcagggcttccctc
agtgacacagtcagactctggaaatctttggaacagacaaaagactacgaactgttgaaa
gcatccacagagaaatttgttcttgatccctttaaggcaaagacaatgaaggacatcaga
gacctctccgaccttgtagagatgcaggagaagatgatgaattgtgtgcaagaagcatct
ggttgcaccagctatgaaattcctgccatcagaaacctcagaaaacttgaatttgcgctg
ggtccagcatgtggccttcaaggattgctaaaacttgtgaaaattcttgcagcatttcca
tcacttcagcatttagatcttgatgctctgagtgaaaatggcataggagatgaaggagca
aagagtctatctgaagtctttccaaccttgccatcactagaaacattaaatttatcacag
aataaaataacagacgtgggtgcagagaaccttgctacagctctcccttccttgtcttcc
ttaaaaacactaagcttgtacaataacaacatttgtgattttggagcagaaaatctggca
aaggttcttcctgcaatgacatctttaagagtgctagatgttcaatataacaaaataact
ggtgttggagcccagcagctgactgacagcctacgaaaatgtccccatatgaagaacttg
gtgatgtggaatcctacaattccctatggagttcttgaacaccttcaccagctggactcc
aggatcagtgtgtag
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integrated database retrieval system
