Lonchura striata (white-rumped munia): 110474822
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Entry
110474822 CDS
T05897
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110474822 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110474822 (DDX42)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110474822 (DDX42)
Spliceosome [BR:
lsr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110474822 (DDX42)
Complex B
110474822 (DDX42)
Complex C
U2 SnRNP specific factors
110474822 (DDX42)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
110474822
NCBI-ProteinID:
XP_031362921
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All DBs
Position
27:complement(1635377..1651371)
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AA seq
923 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDSSNVELPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNVKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSENTDRGNNNSVMSNYEAYKPSTGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNAAKPESPVAATAAAKGVPGFTSTGSLSSVPP
FPSAGAQAFNSTNTSTNSREGGGLARERYNDNRNSRHGEAPRRGEGGGXXNEGQRQSEGG
GRHGDPSRHSDGRHGDVHRHSEGRHFTDLPGGNRNNGDGRISSEGRNSESRNGESRKEAN
SRDKTDGFAVPEPPKRKKSRWDS
NT seq
2772 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttgggtttggtggctttgcc
ataacacctggcaagaaagaggagcccaagctgtctcagcagtcccacagtgctttcggc
accgccggctcctcggcagcatttgcgaaatcggggcctcctcagctgccttccttctac
aaaattgggtcaaagagagccaattttgatgaggagaatgcgtactttgaggatgaagag
gaagattccagcaatgtggaattgccctacattcctgcagagaattcccccacccgccag
cagttccattccaaatcggcggactctgacagcgatgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagagactggaagataaagacaaagaa
aaaaagaacgttaagggtattcgagatgacattgaagaggaagatgaccaagaagcgtat
tttcgctacatggctgagaaccccactgctggtgtggtacaagaggaggaagaggataac
ctggagtatgatagtgatgggaatccaattgcaccgtccaaaaaaatcattgatcctctt
ccacctattgaccattcggagattgaatacccaccatttgagaaaaatttctatgatgag
catgaagagatcaccagcctgaccccgcagcaagtggtggagttacggcataagctgaat
ctccgggtctccggggctgctcctccaagacctggcagtagttttgctcattttgggttt
gatgagcaacttatgcatcagattaggaaatctgagtatacccaacccactccaatacaa
tgccagggtgttccagtggcactaagtggcagagacatgattgggatagccaagactgga
agtgggaaaacagccgccttcatctggccaatgctgatccacatcatggaccagaaggag
cttgagccaggggatggtcccattgcagtgattgtctgcccaaccagggagctctgccag
cagatccactccgagtgcaagcgctttggcaaggcctacaacctgcgctccgtggccgtg
tacggaggagggagcatgtgggagcaagccaaggccctgcaggagggggcagagatcgtg
gtctgcacaccaggtcgtttgattgatcatgtgaaaaagaaagctacaaatctgcagaga
gtcacttaccttgtgtttgatgaggctgacagaatgtttgatatggggtttgaatatcag
gtcagatcaatcgcaagccatgtgcgtcctgacagacagaccctcttgttcagtgccacg
ttccgtaagaagattgagaaattggctcgggatattctgatcgacccaattcgggttgtg
caaggagacattggagaggccaatgaagatgtcactcagattgtggagattttcccctct
gggcccagcaagtggaactggctgacgcggcgcctcgtggagttcacgtcctcggggagc
gtcctcctcttcgtcaccaagaaagccaatgcagaggaattggccaataacctcaagcag
gaggatcataacctggggctgcttcatggggacatggaccagagcgagaggaataaagtc
atttcggaatttaagaaaaaggggatccccatcctggtagctactgatgtggcagctcga
gggttggatatcccttccatcaagactgtcatcaactacgacgtggctcgggacattgac
acgcacacgcaccggatcggccgcaccggccgcgcgggggagaagggagtggcctacact
ctgctgacccccaaggacagcaacttcgctggtgacctcgtcagaaacctggagggtgcc
aaccagcacgtctccaaagagctgctggatttggcaatgcagaatccatggttccggaaa
tcccgttttaaaggagggaagggcaagaagctgaatattggtggtggtggcttgggatac
cgtgaacgccccgggctgggctcagaaaatactgaccgtggaaacaacaacagtgtgatg
agcaactatgaggcctacaagccatccacaggggccatgggggacaggctgacagcaatg
aaagcagctttccagtcccagtacaagagtcactttgttgctgcaagtttaaataaccaa
aagactgggagctctgctgctggtgccagtggctggacaagtgcagggagcctgaactcc
gtcccgacgagttcagcgcagcaaaacgccgccaagcccgagagccccgtggcagccacc
gcggcagcaaagggagtcccgggcttcaccagcacgggcagcttgagcagtgtgcccccg
ttcccgagtgccggagcacaggccttcaacagcacgaacaccagcaccaacagccgagag
ggcggcggcctcgccagggaacggtacaacgacaaccggaacagtcggcacggcgaggcc
ccgcggcgaggggagggcggcggnnnnnncaatgagggccagcgccagagcgaaggtggt
ggccggcacggtgacccctcccggcacagcgacggccgccacggcgacgtccatcgccac
agcgagggccggcacttcaccgacttgccgggcggcaaccgcaacaacggtgacggcagg
atcagcagcgaggggaggaacagcgagagcaggaacggagagagcaggaaggaggccaac
agccgagacaagacagatggttttgctgtcccagagcccccaaagcggaagaagagccgg
tgggacagttaa
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