Lonchura striata (white-rumped munia): 110475081
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Entry
110475081 CDS
T05897
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110475081 (PDZRN3)
Enzymes [BR:
lsr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110475081 (PDZRN3)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
110475081 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
Sina_ZnF
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
zf-TRAF
zf-rbx1
PDZ_Tricorn
TRAF3_RING
U-box
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
110475081
NCBI-ProteinID:
XP_021394636
UniProt:
A0A218UGU5
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All DBs
Position
12:complement(17506408..17642218)
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AA seq
1054 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGSCPVNCQRIS
TKELNHVLPLKSLILKLDIKCDNHARGCEAVVPLQHLGEHAETCDFSPAKCRNRGCRQVL
NLRDVEAHMRERCEARPAGLCEQGCGLVLTHGERRAGAHGCLRALRAHGAALQARAAALE
KALKKEALRAGKREQSLLSRLAAAQLELQVTALRYQKRFTQYSARLDALARARAASPGKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFVSKIVDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHEQAVEAFKTAKEPIVVQVLRRAPRAKAHEPQLVDAATQTDVTFEH
IMALSKMGSPSPPVPGLDPFLLPEDHPSVHEYYDPNDYMGGIHQEMDRDELELEEVDLHR
VNSQDKLGLTVCYRTDDEDDMGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQNREEA
VALLSSEESKNISLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTASMLQ
QKKHEEDGGTTDTATILSNQHEKDSGVGRTDDSTRNDESSEQENNGDDHTTSSNTLGSQK
KLTYSHDTLGSGDMQFSNESFISADCTDVDFLGIPVDECERFRELLELKCQVKSASPYSL
YYHNSSLEMSKSDQESVDRELEMLNEELRNIELECLNIVRAHKMQQLKEQYREPWMLHNS
GFRNYNTSIDVRRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNSLRRTAE
GVGCQGNEGAAAYNVSQKSLCAGSESHESSPGKCHASAKEPEPGKQLESKERKGGDGSKS
PTHGQKPLVSPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCKDLAS
GQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISEMKMGRY
WSKEERKQHLVKAKEQRRRREFMMQSRLECLKEQQGAEEKKEMNIIELSHKKMMKKRNKK
IFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaggtgctggaggacccgctgaccaccccgtgcggacacgtcttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggcagctgccccgtcaactgccagcgcatctcc
accaaggagctcaaccacgtcctgcccctcaagagcctcatcctcaagctggacatcaag
tgcgacaaccacgcgcggggctgcgaggcggtggtgccgctgcagcacctgggcgagcac
gccgagacctgcgacttctctccggccaagtgccgcaaccgcggctgccgccaggtgctc
aacctgcgcgacgtggaagcgcacatgcgggagcgctgcgaggcgcggcccgcggggctg
tgcgagcagggctgcgggctggtgctgacccacggcgagcgccgcgccggcgcccacggc
tgcctgcgggcgctgcgcgcacacggcgccgcgctgcaggcgcgggcggccgcgctggag
aaggcgctgaagaaggaggcgctgcgcgccggcaagcgggagcagtcgctgctgtcgcgg
ctggcggcggcgcagctggagctgcaggtgacggcgctgcgctaccagaagcgcttcacg
cagtacagcgcccgcctggacgcgctggcccgcgcccgcgcagcttcccccggcaagggt
gaagaaactaaagcactgactctggtccttcatcgggactctggatctcttggatttaat
attattggtggccggccgtgcgtggacaatcaggatggctcatccagcgaaggaattttt
gtatccaaaatagttgacagtgggcctgctgctaaggaaggagggctgcaaatccacgac
aggatcattgaggtcaatgggaaggatttatccaaagccacccacgagcaggcggtggag
gcgttcaaaaccgccaaggagcccatcgtggtgcaggtgctgcggagggccccacgcgcc
aaggcccacgagccgcagctggtggacgcggccacccagaccgacgtcaccttcgagcac
atcatggccctcagcaagatgggctcgcccagcccgcccgtccccggcctggaccccttc
ctgctgcccgaagaccatccatccgtgcatgaatactatgacccaaatgactacatggga
ggaattcatcaagaaatggaccgggatgagctggaattagaggaagtggatttacacaga
gtgaacagccaggacaagcttggcctcactgtctgttacagaacggatgatgaagatgac
atgggtatttatgtgagtgagattgatcccaacagcatcgcagcgaaggacgggcggctg
cgagaaggggatcgcattatccagatcaatggcatcgaggtgcagaaccgagaggaagct
gtggcacttctctccagtgaggagagcaagaatatctccttgcttgtggcaaggccagaa
attcagctggatgagggatggatggatgatgacagaaatgattttctggatgacttgcac
atggacatgttagaggaacagcaccaccaggcaatgcaatttactgccagcatgcttcag
cagaagaagcacgaggaggacggaggcaccacagacacagccacgattttgtccaaccag
cacgagaaggacagtggcgtggggcgcacggacgacagcacccgcaacgacgagagctcc
gagcaggagaacaacggggacgatcacaccacctcctccaacaccttggggagccagaag
aagctgacctacagccacgacaccctgggaagcggggacatgcagttcagcaacgagtcc
ttcatctcagctgactgcaccgacgtcgacttcctcggcatccccgtggatgagtgcgag
cggttccgggagctgctggagctgaagtgccaggtgaagtctgccagcccctacagtctg
tactaccacaacagcagcctggagatgagcaaaagcgaccaagagagcgtcgacagagag
ctggagatgctcaacgaggaactgcgcaacatcgagctggagtgcctgaacatcgtgaga
gcgcacaaaatgcagcagctgaaggagcagtaccgggagccctggatgctgcacaacagc
ggcttccgaaactacaacaccagcatcgacgtccgcaggcacgagctgtcggacatcacc
gagctgcccgagaagtcggacaaggacagctcgagcgcctacaacacgggcgagagctgc
cggagcacgccgctgacgctggagatctcccccgacaattccctgcgcagaacggcggaa
ggcgtgggctgccaagggaacgagggggcagcggcctataacgtctcccaaaagagtttg
tgtgccggctcagagagccatgaatccagccctggtaagtgccacgcctctgctaaagag
cctgagcctggcaagcagctggagagcaaggagaggaaaggcggcgacggcagcaaaagc
cccactcacggtcagaagcccctcgtgtccccctaccaccactccccctacaaacacgct
cacatccctgcccacgcccagcactaccagagctacatgcagctgatccagcagaaatcc
gccgtggaatacgctcagagccagatgagcctggtgagtatgtgcaaggacttggcctcg
ggccagagcgagcccaggatggagtggaaggtcaaggtcaggagcgacgggacgcgctac
atcaccaagaggccggtgagggacaggctgctgagggaacgggccatcaagatcaaggag
gagcgcagcgggatgaccacggatgacgatgccatcagcgagatgaagatgggccggtac
tggagcaaggaggagaggaagcagcacttggtgaaagccaaggagcagaggaggcggcgg
gagttcatgatgcagagcaggttagagtgcttaaaggaacagcaaggtgcagaggagaag
aaggagatgaacatcattgaactgagccacaaaaaaatgatgaagaagagaaataaaaaa
atatttgacaattggatgacaatccaagaactgctaacccacggaacgaagtcaccggac
ggcacgcgggtatacaattccttcctgtcagtgactactgtataa
DBGET
integrated database retrieval system
