Lonchura striata (white-rumped munia): 110475339
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Entry
110475339 CDS
T05897
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
lsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110475339 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
110475339 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110475339 (PABPC4)
03041 Spliceosome [BR:
lsr03041
]
110475339 (PABPC4)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
110475339 (PABPC4)
mRNA cycle factors
Stress granule specific factors
110475339 (PABPC4)
Spliceosome [BR:
lsr03041
]
Complex C
Other components
Complex C specific factors
110475339 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_occluded
RRM_10
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
110475339
NCBI-ProteinID:
XP_021395093
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All DBs
Position
23:6680245..6692947
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AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLSPASAPASRGLPAAA
QRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVLVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgccagcagttaccccatggcctcgctgtacgtgggggacctgcacccc
gatatcaccgaggccatgctctacgagaagttcagcccggctggccccgtgctgtccatt
cgggtctgcagggacatgatcacccgccgctccctgggctacgcctacgtcaacttccag
cagcccgcagatgctgagcgagctcttgataccatgaattttgatgtgatcaaagggaaa
cccattcgcatcatgtggtctcagagggacccttccctgaggaagtcaggggttgggaat
gtcttcatcaagaacctggacaaatccattgataacaaggcactttacgacacattctca
gccttcggaaacattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcctttgtgcactttgagacccaggatgctgcagatagggccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagagggag
gctgagctgggagccaaggcgaaggaattcaccaatgtctatattaaaaacttcggggat
gacatggatgatgaaagactgaaggagctctttggcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaagggctttggctttgtaagctttgaaaag
catgaagaggccaacaaggcagtggaagaaatgaacgggaaggacatcaatgggaaaatg
ctctttgtgggcagagcacagaagaaggctgagcgccaggcagagctgaaaagaagattt
gaacagctaaaacaggagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaggccaccaaagctgtgacagagatgaacgggcgcatcgtgggctcc
aagcccctctacgtggcactggcacagaggaaggaggagaggaaggctcacctcaccaac
cagtacatgcagcgcatcgctggcatgagggccttgcctgccaacaccatcatcaaccag
ttccagcccgctgctggcggctatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaaccaaatgacacagatgagacccaacccacgatggcagcaagga
gggagacctcaaggcttccagggaatgcccaatgccatgcgccagtcggggccccggccc
gccctgcgccacctgagccctgccagcgctcccgcctcccgcggcctccccgctgctgcc
cagagagttggtgttggcacagcagcacagaatttggctccccgccctcctgtagctgcc
cctgctcccagggctgtccctccttacaaatacgcctcaagtgtccgcagcccacaccca
ggtgtccaacctctgcaggcacctcagcctgcagtgcttgtgcagggccaggagccactg
acagcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttgttccctctgatccaagctatgcaccccagcctggcggggaagatcacgggaatgctg
ctagagattgacaactcagagctgctgcacatgctggaatctccagagtccctccggtcc
aaggtggaggaggcagtggcagtgctgcaggctcaccaggctaagaaagaagctgcccag
aaagtgggtgtggttgctgctacctcttga
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