KEGG   Lonchura striata (white-rumped munia): 110475362
Entry
110475362         CDS       T05897                                 
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr03082  ATP-dependent chromatin remodeling
lsr03083  Polycomb repressive complex
lsr04110  Cell cycle
lsr04330  Notch signaling pathway
lsr04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    110475362 (HDAC1)
   03083 Polycomb repressive complex
    110475362 (HDAC1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    110475362 (HDAC1)
   04350 TGF-beta signaling pathway
    110475362 (HDAC1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    110475362 (HDAC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lsr03036]
    110475362 (HDAC1)
Enzymes [BR:lsr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     110475362 (HDAC1)
Chromosome and associated proteins [BR:lsr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     110475362 (HDAC1)
   HDAC complexes
    Sin3A-HDAC complex
     110475362 (HDAC1)
    BRAF-HDAC complex
     110475362 (HDAC1)
    REST complex
     110475362 (HDAC1)
    SHIP complex
     110475362 (HDAC1)
    MiDAC complex
     110475362 (HDAC1)
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     110475362 (HDAC1)
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    110475362 (HDAC1)
  Chromatin remodeling factors
   NuRD complex
    110475362 (HDAC1)
SSDB
Motif
Pfam: Hist_deacetyl Rhabdo_NV
Other DBs
NCBI-GeneID: 110475362
NCBI-ProteinID: XP_031362618
LinkDB
Position
23:7137698..7156493
AA seq 538 aa
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVGK
ITDPVCFLLCFIFCLCEPVVDLTTKSRFLQALPVEFLSIFSSKSHFYFLFHCCPFPAAPS
PANPGLNSVLSPSFLCLEALFPRNKCNILIFSRYHQRVLYIDIDIHHGDGVEEAFYTTDR
VMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVISKVMETF
QPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGGGGYTIRNVARCW
TYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRM
LPHAPGVQMQPIPEDAVQEDSGDEEEDDPEKRISIRNSNKRISCDEEFSDSEDEGEGGRK
NVANFKKAKRVKAEEEKEEEEKKDEKEEEKAKEEKAPAAPAAPAAAEPKGVKEETKST
NT seq 1617 nt   +upstreamnt  +downstreamnt
atggcgctgacgcagggcacgaagcgcaaagtctgctactactacgatggggatgttggg
aattattattatggccaaggacatcccatgaaaccccacaggatccgcatgacccacaac
ctcctgctcaactatgggctctacaggaagatggagatctatcgtcctcacaaggccaat
gcagaggagatgaccaagtaccacagcgatgattacatcaaattcctgaggtccatccgc
cctgacaacatgtctgagtacagcaagcagatgcaaagatttaatgttggggaggactgc
cctgtgtttgatgggctctttgagttctgtcagctctctgctggaggctctgttggtaag
atcacagatcctgtgtgttttttattgtgtttcatattctgtctctgcgaacctgttgtt
gatttaacaacgaaatccagatttctccaagctttgcctgttgaattcctttccattttc
agcagcaaaagtcacttttattttctgttccactgctgtcccttccctgcagctccttcc
cctgccaatcctggcctgaattccgtgctctctcccagtttcctctgcttggaggcactt
tttcctcggaataaatgcaatattctgattttttccaggtaccaccagcgggtgctgtac
attgacatcgacatccaccacggggatggggtggaggaggctttttacaccacagacagg
gtcatgaccgtgtccttccacaaatacggagaatatttcccaggaactggggacctgagg
gacatcggggcaggcaaagggaagtactacgctgtcaattacccgctgcgggacggcatc
gacgacgagtcctacgaagccattttcaaacctgtgatctccaaggtgatggagacgttc
cagcccagcgccgttgtcctgcagtgcggctccgattccctgtctggggacaggctgggc
tgcttcaacctcaccatcaaaggccacgccaagtgtgtggagtttgtgaagagctttaac
ctgcccatgctgatgctgggaggaggggggtacacgatccgcaacgtggctcgctgctgg
acctacgagaccgccgtggctctggacactgagattcccaatgaacttccatacaacgac
tactttgagtactttgggccagacttcaagctgcacatcagcccctccaacatgaccaac
cagaacaccaacgaatacctggagaaaatcaagcagcggctcttcgagaacctgaggatg
ctccctcacgctcccggggtccagatgcagccaattcctgaggatgctgtgcaggaggac
agtggggatgaggaggaggatgatcctgaaaaacgcatttccatccgaaattccaacaag
agaatatcctgtgacgaggaattctccgactccgaggacgagggggagggagggcgcaag
aacgtcgccaacttcaaaaaagccaaacgtgtgaaggcagaggaggagaaggaggaagag
gagaagaaagatgagaaggaagaggaaaaagcaaaagaggaaaaagcaccagcagcacca
gcagcaccagcagcagcagaacccaaaggggtgaaggaagagacaaaatccacctga

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