Lonchura striata (white-rumped munia): 110475805
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Entry
110475805 CDS
T05897
Symbol
MSH2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
110475805 (MSH2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110475805 (MSH2)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
110475805 (MSH2)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
DUF6437
Motif
Other DBs
NCBI-GeneID:
110475805
NCBI-ProteinID:
XP_021395852
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Position
3:20508236..20555119
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AA seq
936 aa
AA seq
DB search
MAVEPPREAVWPEGAGAEAGFVRAVLSLPEKPDTTVRFFERGDYYTVHGADARLAARELF
RTRAVIRQLAGAPGTEKLESVVLSKMNFESFVRDLLLVRHYRVEVYKNKAGSKSVKENDW
YLAYKGSPGNLAQFEEVLFANNDMSTAIGVVGVKLSGADGQRVVGVGYVDTTLRKLSVCE
FPDNDQFSNLEALLVQLGPKECVLPGGETAGEMGKLRQVIQRGGILITDRKKADFTTKDT
VQDLNRLLKSKKEEQLNSAALPEMEKQVAVSSLSAVIKFLELLSDESNFGQFELTTFDLS
QYMVLDNAAVQALNLFQSSVENANTAQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKTRIE
ERLNLVEAFVMDPELRQCLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRMFQAINQLPNV
VQALEKHEGAHQMLLLAVFITPLNDICSDFSKFLEMIETTLDMEKVENHEFLVKASFDPN
LTELREKMNELEEKMQSLLKTAAKELGLEAGKSIKLESNSQFGHHFRVTCKEEKALRNNS
KYGIIDTQKNGVKFTNSKLSTINEEYIRNREEYEEAQDAIVKEIINIASGYAEPIQTMND
VIAQLDAIVSFAHVSNGAPVPYVRPVLLEKGQGRIVLKGARHPCIEVQDEVAFIPNDITF
EKGKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEITIVDCILARVGAGDS
QLKGVSTFMAEMLETASILRTATENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICGF
AMFATHFHELTALADQVPTVNNLHVTALTSDDTLTMLYRVKEGVCDQSFGIHVAELAAFP
KHVIESAREKALELEEFQNIGKSKESEGEPPAKKLYREREEGEKIIQDFLCQVKALPLTD
MSEEDIKVKLKELRNDVLAKNNSFVNEIISRTKVTS
NT seq
2811 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggagccgccgcgggaggccgtgtggcccgagggcgcgggcgccgaggcgggc
ttcgtgcgcgccgtgctctcgctgcccgagaagcccgacaccaccgtgcgcttcttcgag
cgcggcgactactacacggtgcacggcgcggacgcgcggctggcggcccgcgagctgttc
cgcacccgcgccgtcatccgccagctggcgggggcaccgggaactgagaagcttgagagt
gttgtgcttagtaaaatgaactttgaatcttttgtgagggacctgcttctggttcgtcat
tacagagttgaagtttacaagaacaaagcagggagcaaatctgtcaaagaaaatgactgg
tatttagcttacaagggttctccaggaaatcttgcccagtttgaagaagttctctttgcc
aacaatgacatgtccacagccatcggggttgtgggggtgaagctctctggtgctgatggg
cagagagtagtaggagtgggctatgtcgacactacgctgagaaaattgagtgtttgtgag
ttcccagataatgatcagttctccaaccttgaagctctactggttcaactgggcccgaag
gagtgtgtgctgccaggaggagagactgctggagagatggggaaactcagacaagtcatt
cagagggggggaatcctgattacagacaggaagaaggcagatttcacaacaaaagatact
gttcaggatctcaatcgcttgttgaaatcaaaaaaggaagagcagctgaacagtgcagca
ctgccagagatggaaaagcaggttgctgtttcatctttgtcagctgttatcaagtttttg
gagctgctgtcagatgagtctaattttggacagtttgaactgactacgtttgatcttagt
caatatatggttctagacaatgcagctgttcaagccctcaacctttttcagagttctgta
gaaaatgcaaatactgcacagtctctagctggtttactgaataaatgcagaacccctcaa
ggacaaagattagtcaatcagtggatcaagcaaccacttatggacaagaccagaattgaa
gaaaggttgaatttggttgaagcttttgtgatggatccagagctacgtcagtgccttcag
gaagatctgttacgtcgctttccagacctcaaccggctggcaaagaaatttcagagacaa
gcagcaaacttacaagactgttaccgaatgttccaggctatcaatcaactgcctaatgtt
gtacaagcactagaaaaacatgaaggagctcaccagatgttgttgttggctgtatttata
acacctcttaatgatatctgctctgacttctcaaagtttctggagatgatagaaacaacg
ttggacatggaaaaggtggagaatcatgaatttctcgtcaaggcttcttttgatcctaat
ttaacagaattaagagagaagatgaatgaactggaagaaaaaatgcagtccttactaaag
actgcagccaaagaactaggtttggaagctggcaaaagtatcaaactggaatcaaactca
cagtttgggcatcactttagggtaacttgtaaggaggaaaaagctctccgtaacaattca
aaatatggaattattgatacacagaagaatggtgtgaaatttactaacagcaaactgagc
accatcaatgaagagtatataaggaacagggaagagtatgaagaggctcaggatgcaatt
gttaaggaaatcattaacattgcttcaggttatgcagagcccatacagaccatgaatgat
gtgatagctcagctggatgccattgtcagctttgcccacgtgtccaacggagcgcccgtg
ccctacgtccggcccgtccttctggagaaggggcagggcaggattgtgctgaaaggcgcc
aggcacccctgcatcgaagtgcaggacgaggtggccttcatccccaatgacatcaccttc
gagaagggcaagcagatgttccacattatcactggccctaacatggggggaaaatcaacg
tacatccgacagacaggagtgattgtccttatggcccaaattgggtgttttgtgccatgt
gagtctgcagaaataaccattgtggattgtatcctggctcgggtgggagcaggagacagc
cagctgaaaggagtgtctactttcatggctgaaatgctggaaactgcttcaatccttagg
acagcaactgaaaattccctgataatcattgatgagctgggaagaggaacttctacctac
gatggctttggcttagcctgggccatctcagagtacattgccagcaaaatctgtgggttt
gccatgtttgctacacacttccatgagctcacagctcttgctgaccaagtgccaacagtc
aacaacctccatgtcactgccctgaccagcgatgacactctgaccatgctttatcgtgtc
aaggaaggtgtttgtgaccagagttttggaatacatgtagcagagttggcagctttccca
aagcatgtgatagaaagtgcaagagagaaagcattggagctggaggagtttcaaaacatt
ggcaagtccaaggaatctgaaggagaaccaccagccaagaaattatacagagaaagagag
gaaggtgaaaagataattcaggattttctttgtcaagtgaaagcattgcccctgacagat
atgtcagaagaagacattaaagtcaagttgaaagagctgagaaatgatgtgctggcgaag
aacaacagttttgtgaatgaaataatttctcgaacaaaagttacgtcatga
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