Lonchura striata (white-rumped munia): 110476090
Help
Entry
110476090 CDS
T05897
Symbol
SLX4
Name
(RefSeq) structure-specific endonuclease subunit SLX4
KO
K10484
structure-specific endonuclease subunit SLX4 (BTB/POZ domain-containing protein 12)
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03460 Fanconi anemia pathway
110476090 (SLX4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110476090 (SLX4)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110476090 (SLX4)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul3 complex
Adoptor and target recognizing subunit (BTB)
110476090 (SLX4)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110476090 (SLX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Slx4
BTB
zf-C2H2_jaz
zf-C2H2_6
Zn-C2H2_12
Baculo_IE-1
B129_C2H2-zf
Zf-C2H2_ZNF451_C
Motif
Other DBs
NCBI-GeneID:
110476090
NCBI-ProteinID:
XP_031361972
LinkDB
All DBs
Position
14:16559976..16587814
Genome browser
AA seq
1860 aa
AA seq
DB search
MDEQDNDFKELWANILSRAKKKAGDAGATKRVQNRPKSTTTQNRLRRGKAAAKSQTHHHL
PAVKETNLLQNLGPEEQALVHEEDGDAAACSGETAEGNGARSPLPASQPSTGTTECSQRP
LTVNPASGCSQTTLPFLPATPPGTCSSPTPKVRVAELVVERMQQFKRVAPEQLKHSSDGS
MPKAAASRDFPARSQEQNPPEDDTHHPPSVEHDSALALALQQESKEEALASLEDAGLFFC
QICQKDLTAMNTLRREQHVNRCLDEMEEAQMSSSSKPVVPECPICGKQFQTLQSRVSHLK
RCAVEMDVPPNLLLQAVQLQVATLGDAALQCPTSNQPSRAKRKGPSSEDLRKTQKRAKME
PKDEDLQVAMAMSRSLLEQEKQEQAKSVTNVKAVAAFPIKWKPGSEKKRRRKGTSAPPPL
LLQDPEKVHKRIQERVAMMLTEEVEFPPTPQLPISRILEDESGKAAWLMPFSKAKKCFLW
NISALTGPCDPESFYTAALTPPIVPWKPVQNKPENLQSSVGSHQPKVSQQTQPDLSSQEP
TCTKVGGQTSVEAKPGPEGDGQLLSPSQKDIQTLQDLVELAREGLTLTQWNLDSGHVQAA
GQAGEELPSGDLPLSGFVPPSKKKKLLRSSAKRTSLGLLAQDFGAMVNNPHLSDVQFQVD
SGDVLYAHLFVLYARCPAAAQAVHSEGLVVEEDGAAPTRRVLLSDVSAQAVAAFLQYLYA
ADTSFPAGLRPQLQALAARFGVRELMAERESSTGESQVSSGVDSEDDLISVRDDEDCEDR
AENFQDLLKSVWVGEDEEEVAMLSPECQKEDDSEVGEQELEEIYEFAATQRKMAQDEREV
SRGTHCSICSDTEAALDTNQQTEQEEVKRPESASVSYSLKDLRDSNSVERSDCDLSAQEE
KMQNIKRCKSMNDPQTTIVPRHSEPQKWDGTSHGAKEGRAAGRCEDVKDSRSPQVSRDKA
DHCEDQFPGFQGDTGLNDSYELLFSASQRYHCEPSPVTEVTKESGKPLSEKRVGLNDSIL
FSKSQKDCSPCKNGFCRSPIPQPYVSLFPALGSSPASPKSEGKFAREHVSTPKQNKKEKS
SPSDKIHSQKAKELSAASKNEITVSPAELPHSESNKHTHVPVLSSPGKTQDAAAQGIKEG
DVIVLSSSDDEMELQQGKKLPESDSALKKMEVPAHLKCTDMEKGPEIPKPDHNSSVPETE
QRSVQVSCSNTDTVCVSHDVKVCPEFPLSRQTGACTEIKQSPNPSPGKRLTSEMSPGTDS
SWLVPGTPVLRKSRSFSTQTEVTSVNSLKGAGSKLSTKNLAAGNSNHEMAGNLIKVLKTS
DKHLPVENLASGRSPPSSPAAESFSKNPFPVSPVDPVLLSPGHTNKESKCANNSGLPTLV
PLCQEQPLEDKINISVVELEDSDREVSLPSLGSSVLLCEEPPIPVDDCWHIGYLSPARDD
CHDSSQVGHAKTSMASSPSPGSWQELGESPVQVQGIKGSTPLQGSPAGRRTTLHCPEKSP
IEPCSSVGSRASYLDSKIWDDWNGEEKEDELPEILPLSQRLAAAARASPTHPVKTPESSC
QENNRSPSTPMTPMPAYSIMETPQLKKELSKFGVRALPKRQMVLKLKEIFQYTHQDGDSD
FEDAISYSQPLPQKSPARRPRQPKGRAAGRNRAGALRVGGKGKQLAKASAVLPRGEADGA
SHGTRCATPKDRTKATHHPEGAKEQERPSVSLAADGDELPASQESACSSVDGSDISFGSQ
SSFVNGFETRAFTSEEEEEEFPASQAAAREEEKLEAIRCYIRSNTALYNRILFYEPIELA
DLHAELKQNGIKISKTKLLDFLDSQCITSTMARARKEQVQKRKENRKQRRRYRVKPTPSR
NT seq
5583 nt
NT seq
+upstream
nt +downstream
nt
atggatgaacaggacaatgattttaaagagttgtgggcaaatattttgagtagggcaaag
aaaaaggctggggatgctggggcaacaaagagggttcagaacaggccaaagagcaccaca
acacaaaacagattaagaagaggcaaagctgctgctaagagccaaacccatcatcactta
ccagcagtgaaggagacaaatttacttcaaaatttgggtccagaggagcaagcattggtg
cacgaagaagatggtgatgctgcagcctgtagtggtgagactgcagaggggaatggagca
agaagccctctccctgccagccagccaagcacagggaccactgagtgtagccagaggcct
ctgacagtaaatccagcaagtggctgttcccagactactctgcccttccttcctgctact
cctccaggaacctgctcctcacccacccccaaggtgcgggtggcagagctggtggtggag
agaatgcagcagttcaagagggtggcacctgaacagctgaaacacagctcggatgggagc
atgccaaaggctgcagccagcagggatttccctgccaggagccaggagcagaaccctcct
gaggatgatacccaccatcccccatccgtggaacacgacagtgctctggctttggctctt
cagcaggaatccaaggaggaagccctggcaagcctggaggatgcaggcttgttcttctgt
cagatctgccagaaggatctcacagccatgaacaccctgcggcgagagcagcacgtcaac
aggtgtctggatgagatggaagaagcacagatgtcatcctccagcaaaccagtggtccct
gagtgtcccatctgtgggaagcagttccaaacgctccagagccgagtcagtcacctgaaa
cgctgtgctgtggagatggatgtgcctcctaatctgctgcttcaggcagtgcagttgcag
gtggccacgcttggtgatgcagctctgcagtgccctaccagcaatcagcccagcagggca
aagcggaaaggcccctccagcgaggacttgaggaaaacacagaagagggccaaaatggag
cctaaggatgaagatttgcaggttgccatggcaatgtcacgctctctgttggagcaagaa
aagcaggaacaagcaaaatcagttacaaatgtgaaagcagtggctgctttcccaatcaaa
tggaagccgggatcagagaaaaaaaggcgtagaaaaggcaccagtgcccctccacctctg
ctgctccaggacccagagaaggtccacaagaggatccaggagagagtagctatgatgctg
acagaagaggtggaattccctcccacccctcagctgcccattagtaggattctggaggat
gaatctggaaaagcagcctggctcatgccattctccaaggccaagaaatgctttttatgg
aacatcagtgctctgacaggaccctgtgaccctgaatcattctacactgcagccttaacc
cctccaattgtaccctggaagcctgtgcagaataagccagaaaaccttcagtcatcggtg
ggatctcatcagccaaaagtatcccagcaaactcagcctgacctcagttctcaggagccc
acttgcacgaaggttggaggccaaacttctgttgaagccaagccaggccctgaaggagat
gggcagcttttatccccgagccagaaggacattcagaccctgcaggacctggtggagttg
gccagggaaggactcacccttactcagtggaaccttgactctggccatgttcaggcagca
gggcaggcaggagaagaactgccttccggtgatcttccacttagtggctttgtgccccca
tccaagaagaagaaactcctcaggagcagcgctaaaagaacctctcttgggctgctagct
caagattttggtgccatggtcaacaacccccacctgagtgatgtccagttccaggtggac
agcggggacgtcctctacgcccacctgttcgtgttgtacgcgcggtgtccggcggcggct
caggctgtgcacagcgaggggttggtggtggaggaggacggggccgcgccgacgcgccgg
gtgctgctgagcgatgtgtcagcccaggctgtggctgccttcctgcagtacctctatgct
gctgacaccagcttccctgctgggctgcggccccagctgcaggctctggctgccaggttt
ggtgtgagggaactgatggcagagcgtgaaagcagcactggagagagccaggtgtcttct
ggagtagattcagaagatgatcttatctctgtgagggatgatgaagattgtgaggacaga
gctgagaacttccaagacctcttgaagtcagtgtgggtgggtgaagatgaggaagaagta
gctatgctgagccccgagtgccagaaggaggatgacagtgaggtgggagaacaagagctg
gaggaaatctatgagtttgctgcaactcagagaaagatggctcaggatgaaagagaggtg
agcaggggaacacactgcagcatctgcagtgacactgaggcagccctagatacaaaccag
caaacggagcaggaagaggtaaagagacctgaatctgcttcagtaagctacagcctcaaa
gatctgagggacagcaacagtgtggaaagatctgattgtgacttgtctgcacaagaagag
aagatgcagaatataaagaggtgcaagagcatgaatgatccacagaccactattgtgcct
cgccacagtgaacctcagaaatgggatggaacatcccatggtgctaaggaaggaagagct
gctgggagatgtgaggatgtgaaggattccaggtcacctcaggtctcacgtgacaaggca
gatcactgtgaagaccagtttcctggcttccagggtgatactggtctaaatgacagctat
gaacttttgttttctgcctctcagaggtatcactgtgagccttccccagtgacagaagtt
accaaagaatcaggaaagccccttagtgaaaaacgtgttggtcttaatgattcaattctg
ttcagcaagtcacaaaaagactgctctccatgtaagaatggattttgtaggagtccaatt
cctcagccttatgtgtccctttttcctgctcttggctcttcacctgcatctccaaaatca
gagggaaagtttgccagagaacatgtgtcaacaccaaagcaaaacaaaaaggaaaaatca
tccccatctgataaaatacactcccagaaagccaaggagctgagtgctgcttcaaaaaat
gagatcacagtttctccagcagagcttcctcacagtgaatcaaacaagcatacacatgtc
ccagtgttgtcatcaccaggcaagactcaggatgctgcagctcaggggatcaaggagggt
gatgttattgttttatcttcttctgatgatgaaatggagttacaacaaggcaagaagttg
ccagagtctgactctgctctgaagaaaatggaagtccctgcgcacctgaagtgtacagac
atggaaaaaggtcctgagataccaaaacctgaccataattcatcagtccccgaaacagag
cagagatcagtccaggtctcatgtagcaatacagacacagtgtgtgtaagtcatgatgta
aaggtgtgtcctgaatttcctctcagcagacaaacaggtgcttgtacagagatcaaacag
agtccaaacccgagccctgggaaaaggctcactagtgaaatgtctccaggcacagacagc
tcctggcttgtgccaggaacaccagttctgaggaaaagcagaagcttctcaacacagact
gaggtcacaagtgttaattctttaaagggtgcaggatctaaactcagcacaaagaattta
gcagcaggtaatagtaaccatgaaatggctggaaatttaataaaagttctcaaaacgtca
gacaaacatttgcctgtggagaacttggccagtggaaggagcccacccagcagcccggca
gcagaatccttttccaaaaacccctttccagtttctccagtagatccagttctcctctcc
cctggccacaccaacaaggaaagcaaatgtgccaataactcaggtttacccacactggtg
cctctgtgccaggagcagccactggaggataaaatcaacatcagtgtggttgagctggag
gacagtgacagggaagtaagtctgccttctctgggtagcagtgtcctgctgtgtgaggag
cccccaatccctgttgatgactgctggcacattgggtatctgtcaccagccagagatgac
tgccatgactccagccaggttggccatgcaaagaccagcatggccagcagccccagccct
ggctcttggcaggagctgggagagagcccagtccaggtgcagggaattaagggcagcacc
cctctccaaggaagtcctgctggcaggagaacaactttgcactgccctgagaagagccct
attgagccatgttcatcagtgggcagcagagccagttacttggactccaaaatctgggat
gactggaatggagaagagaaggaagatgaacttccagagattcttcctctgtctcagagg
ctggcagctgcagcacgggccagtccgacacaccctgtcaagactcctgaatcttcctgt
caggagaacaacaggtcccccagcactccaatgacacccatgccagcttattccatcatg
gagaccccgcagctgaagaaggagctgagcaaattcggtgtccgtgctctcccaaaacgc
cagatggtgttgaagctgaaggagatattccagtacactcaccaggatggggactctgac
tttgaggatgcaatctcctattcccagcccctcccacagaagtccccagccagacggccg
aggcagccgaagggccgggctgcaggcaggaatcgcgccggcgccctcagggttgggggc
aaggggaagcagcttgccaaggcttctgcagtgctccctaggggtgaggctgatggtgca
tcccatggaacacgctgtgccacacccaaggacagaactaaagcgacacatcacccagag
ggagccaaagagcaggaaaggccatctgtgtccctggcagctgatggcgacgagctcccg
gcatcccaggaatcggcgtgttcttcagtggatggaagtgacatctcctttggttcacag
agttcctttgtgaatggatttgaaacccgtgcttttacatctgaggaggaggaagaggaa
tttccagcatctcaagcagcagctcgggaagaggaaaagctggaggcaatcaggtgctac
atccgctcaaacacggccctgtacaacaggattctcttctatgagcccatcgagctggct
gatctgcatgcagagctcaaacagaacggtattaaaatttccaagacaaagctgctggac
tttctggattctcagtgcatcacatctaccatggccagagcccggaaagagcaggtacag
aaaaggaaggagaacagaaaacagagaaggcgataccgagtgaagcccaccccttcccgc
tga
DBGET
integrated database retrieval system
