Lonchura striata (white-rumped munia): 110476219
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Entry
110476219 CDS
T05897
Symbol
TDRD12
Name
(RefSeq) putative ATP-dependent RNA helicase TDRD12
KO
K18409
ATP-dependent RNA helicase TDRD12 [EC:
5.6.2.5
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsr03036
]
110476219 (TDRD12)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
110476219 (TDRD12)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110476219 (TDRD12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
DEAD
CS
Helicase_C
EF-hand_3
Motif
Other DBs
NCBI-GeneID:
110476219
NCBI-ProteinID:
XP_031361701
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All DBs
Position
11:16235808..16258161
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AA seq
1227 aa
AA seq
DB search
MEVTILKIEDPSCFWIAVKEYAPGIASETVYENLNAEMEQFYNSSKDADEVKQEEIEKGQ
VYVVFSEELKCWCRALVKSVRCHIDGFQLVCFLVDYAKYCYVASENIRVLVGAFAKISHR
AKKCRLHCTKPLTLHIDYCENTAKIGPAKRWDTAAVDHFRKLLEEATEVKATIQTVEDKV
LEVFLFVTIRDEKICVNDDLVAKHFAHYKEGEGPAKSSSDVSDDEVLLDPECVPVEFVGP
TFLARPKLPFGEEMSSHLGPGLAGCNSVLEKPSQRSHTDLNDSIMPVASMAPGLPSKEDK
AVWTERLPQFLNSISLQTHIVEDDQQSFQNVGKEKNFVFLSKKIEPSSFLETAPLFDGLK
KELACSKFSGPTFTQSYCWPAIAWGCDVVAISHQGNDPLLYIPPVLTLLQEKDYQALRNM
SGPLALIVCPGWKKAQLVFDLLNTFGKGCRPLHPMLIILGQNKEAASQMEMQGCEVVVTT
PYNLQRLLEHNTRLLYRVCHLVLDETEVLFSDTFEQMCTILTCYKKATAQAQGNLPHQII
AVGTQWNKHITPLIKEFMTDPYIVITVIEEAAIFGNVQQVVQPCMNSNRTAELLKILDFT
QKNFQKVLIFTDSITEVEMIHKALKSHSIVSMKKHRESRCNAACVLERWRKMYSSGTPAV
LVLTDDCLQSLGITDATWVIHFNFPSPAVFGQRLQSMSDNFCTGIKDSAVNQEDTKAKSV
ILLTENSSCHAPEILYYLKRAEAEIPEELYDLTARVQESEEDEKFSRPLCASLKTFGICR
NRTECPDRHQINLSIDMAQNIADEMIETLECVTILPLFIVHATNYFGRIVKKQKDQYAVL
AKEMNDYFKVPGHRISVNTMEKSVFYGLREGAICHRVQVVENPAKDEENVYKVTVKYIDE
GRTSQVNSDQLLHLPLKFQSLPPQAVEIIVCRVKPVENEAEWNPKVTDHISSKIKGKLHH
AKVIHALGKTVWVDPMIGVTSLPSIKMWINEYNIRSEILSTGLGTDNPEHVGAIQKLCRQ
MPVLDHAESLECLSTKEDTAGLEEASSPQAPSIQENTAESFNSPVTPPSNDAVQTKEAED
STVHQQKSCHPPIKWFQDDVSVSLKVQILKATDSKCEFSREKVTFSAYSEGKLYVADLEL
YQSVIAEKSTCVIKDTEAVILLVKEKKGAWCKLLKNKNPHVSLDFEHWEESEDERPFTVG
SAKVSYPPAGSEDWFESSEDSDTESDE
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaagtcacgatattaaagattgaggatccaagttgcttttggattgctgtgaaagaa
tatgcgcccggcatagccagtgaaactgtgtatgaaaacctgaatgctgaaatggaacag
ttttataatagttccaaagatgcagatgaagtaaaacaagaggagatagaaaaaggccag
gtttatgtggttttcagtgaggagctgaagtgctggtgtagggctctggtcaagtcagtc
cggtgccatatagatggtttccagcttgtgtgtttcctcgtggattatgccaagtactgc
tatgttgcatcagagaacattcgagttttagtaggagcatttgcaaagatctcacatagg
gcaaagaagtgtcggctgcactgcacaaagccactgacactgcatattgactactgtgaa
aacactgccaaaataggaccagccaaaagatgggatactgctgctgtcgatcattttcga
aagcttcttgaagaggctaccgaggttaaagccacaatacagacagtagaagataaagtg
ttagaggtgtttctttttgtgactataagagatgaaaagatctgtgttaatgatgatctg
gttgcaaagcactttgctcattacaaggaaggtgaagggcctgccaagagttcttcagat
gtttctgatgatgaagtgttgttagatcctgagtgtgttccagtggagtttgttggtcct
acgtttcttgccaggccaaaactgccctttggggaagagatgtcatcgcatcttgggcca
ggtcttgctggttgtaattctgttcttgaaaagccatcccaaaggtctcacacagatcta
aatgacagtatcatgcctgtggccagcatggcgccaggtttgccttccaaggaagataaa
gcagtttggacagagaggcttccacagttcttaaattccatttcccttcagacacacata
gttgaagatgaccaacagagttttcaaaatgttgggaaagaaaaaaattttgtgttcctg
agcaagaaaattgaaccatcatcatttttggaaacagcaccactttttgatggtctgaaa
aaggaacttgcttgcagcaagttttcaggccctaccttcacacagtcctactgttggcca
gcaatagcttggggatgtgatgttgttgccatctcccatcagggaaatgatcccttatta
tatattccaccagttcttacacttttgcaggaaaaggattaccaagccttgcgcaacatg
agtgggccactagcactgattgtatgtcctggatggaagaaggcacaacttgtttttgac
ctgctgaacacattcgggaaaggctgcagaccccttcatccgatgctgataattcttggg
cagaacaaggaggcagccagccaaatggaaatgcaaggctgtgaagtagtagtgactaca
ccatacaacctccagagactgctggaacataacactaggttgttgtacagggtttgccat
cttgttcttgatgagactgaggtgctgttctctgacacttttgaacagatgtgtactata
ctgacttgttacaagaaagccactgctcaggcgcaggggaatctaccacatcagatcatt
gctgtgggaactcagtggaataagcatatcacacccttgataaaggaattcatgactgat
ccttacattgtgataactgttatcgaagaagctgccatctttggaaatgtgcaacaggtg
gtgcaaccctgcatgaacagcaacagaactgccgagttgctcaaaatcctagattttacc
cagaagaattttcagaaagtgctgatcttcactgactcaataactgaagtagagatgatt
cataaggcactgaagagccactcaatagtttccatgaaaaagcatagagagagcaggtgt
aatgctgcatgtgtcttggagaggtggagaaaaatgtacagttctggcactcctgctgtg
ttagttttaacagatgactgcctgcagtccttgggaatcacagatgcaacttgggtgatc
catttcaatttcccatctccagcagtctttgggcagcgcctgcaaagcatgagtgacaac
ttctgcactggcataaaggattctgctgtaaatcaggaagatacgaaggccaagtcagtc
attctgctgacagagaacagttcctgtcatgcacctgagattctctactatttaaagcgt
gcagaagctgaaattccagaagaactctatgatttgactgccagggtgcaagaatctgag
gaagacgagaaattttcaagacccctttgtgcttctcttaaaacatttgggatttgcagg
aacagaacagagtgtccagatcgtcatcaaattaatttatcaatagacatggcccagaat
attgcagatgaaatgatagaaacactggaatgtgtgacaatcctgcctctcttcattgta
catgcaacaaactactttggtcgaatagtcaagaaacaaaaggaccaatatgcagttctt
gctaaagaaatgaatgattatttcaaggtaccaggacataggatttctgttaacaccatg
gagaagtcagtgttctatgggttacgtgagggagccatttgccacagggttcaggtggta
gagaatccagcaaaagatgaagaaaatgtctacaaggtcacagttaaatacatagatgaa
ggcaggacaagtcaagtgaatagtgatcagctgcttcacttacctctgaagttccagagt
ctgccacctcaggctgtggaaattatagtttgtagagtaaaacccgtagagaatgaagct
gaatggaatccaaaggtgactgatcacattagtagcaaaattaaaggaaaacttcatcat
gcaaaagtgatacatgccttgggaaagacagtttgggttgacccaatgattggggttacc
agtcttccctcaatcaagatgtggatcaatgagtacaacattcggtctgagattttgtcg
acgggtttgggaaccgacaatcctgaacatgtaggagcaattcagaagctatgcagacag
atgccagttttggatcatgcagagagcttggagtgtttaagcacaaaagaggatacagct
ggtctagaggaagcatccagtccacaggctccatcaatacaagaaaacactgctgaaagc
tttaacagtcctgtgactcctccaagcaatgatgcagttcaaacaaaagaagcagaagac
tctactgtgcatcagcagaaaagctgtcatccaccaatcaagtggtttcaagatgatgtg
agtgtgtcactgaaggtacaaatactgaaggcaactgacagtaaatgcgagttctctaga
gaaaaggtaactttcagtgcttattcagaaggcaaactttatgtggctgacctggagctg
tatcagtcagtaattgcagagaagtccacatgtgtgattaaggatacagaggctgtaatt
ttactggtaaaagagaaaaaaggagcatggtgcaaattactgaagaacaagaatcctcac
gtgtccttagattttgaacactgggaagagtctgaagatgaaaggccttttacagttggt
tctgcaaaagtgagctaccctcctgcgggatctgaggactggtttgagtcctcagaagac
agtgatacagaaagtgatgaataa
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integrated database retrieval system
