Lonchura striata (white-rumped munia): 110476303
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Entry
110476303 CDS
T05897
Symbol
EDC4
Name
(RefSeq) enhancer of mRNA-decapping protein 4
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110476303 (EDC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110476303 (EDC4)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110476303 (EDC4)
mRNA degradation factors
5'-3' decay
Decapping complex
110476303 (EDC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Beta-prop_EDC4L
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_HPS5
WD40_Prp19
WD40_CDC20-Fz
WDR55
EAD9
RnlA-toxin_DBD
Motif
Other DBs
NCBI-GeneID:
110476303
NCBI-ProteinID:
XP_021396832
LinkDB
All DBs
Position
11:7083537..7116909
Genome browser
AA seq
1402 aa
AA seq
DB search
MASCSSIDIEDATQHLRDILKLDRPGGSVNENQRPSNSYNGDLNGLLVPDPLGSGDGPAL
AKPVHRSISLGALQEKQVICLSGDDSSTCLVISAKDVEVVASSDSSITSKARGSNKVKIQ
PVARYDWEQKYYYGNLIAVSNSYLAYAIRAASNGSAMVRVLSVSTAERTLLKGFTGGVAD
LAFAHLNSNQLACLDEAGNLFVWRLAMDKDKIQEEILVNIKRPDNTPLNTFRRIIWCPFI
PDDNEESGEEGSQTLALLHEDRAEVWDLDIIRTNNSSWPVEVPDIKEGFIVVKGHSTCLS
EGALSPDGTVLATASHDGFVKFWQIYIEGQDEPRCLHEWKPHDGRPLSCLLFCDNHKKQD
PEVPFWRFLITGADQNRELKMWCTVSWTCLQTVRFSPDIFSSMTILPSLKVCLDLSAEYL
ILSDVQRKVLYVMELMQNQEEGKAYFSSISEFLLTHPVLSFGIQAVSRCRLRHTEVLPAE
EENDSLSVEGAQGSGAVESAAGVLIKLFCVHTKALQDVQIRFQPLHSPDTSASMPAHSSH
EEFAFPDHMGDLGTEGLGSEKESVHGSQPDLRRIADLPVPADFLSLSSDAKPKLMTPDAF
MTPSTSLQQIAVSPGSSVSSLTAVTAMSSTSVTDTSLPRASEDLTVSPKMQLDTSLTLSS
SSSSLQTSPRSHSVLIPGLPDKLTPKAPVPVAPGNSSLALELQEVEPLVVPQASPTRERS
PDVISSASTAMSQDIPEIASETLQRSFAAAPAGLPGEVLEPGHHADSMASAASALHLLSP
RNRHNSEHSHHSLDMPPVEVDRLNAPSLLETALTQENASSDSVVSQPWPAAPDITRETRN
SMADSPRDEVEEKHKSSSYHRHSYHLLQHDSQDASAEQSDHDDEVASLASTSGGFGAKAS
AQRLPVKDWKVKASPRASPKLKRKAKKDDGDINQSPRSSNNQVTAEFQDEVMCILRGQQR
ELSELRQNQMELLQRLTDHLDAIQSSLMGHMERVIDSQQEQEQRRLDRVLMEGQQRNGQL
QEHLSQQLSQSLSAAVCNRLERTIREEMKKTVPQCISKSMDPTVSQLSNTIATKLTAVEG
TLKENITKLVKSKNLTDSVVRATADTLQGPIQSAYREAFQSVVLPAFEKSCQSMFQQIND
TFKQGTQEYIQQLEAHLKNKKAREQEVREPLLNQLRQLLSTFQSTTEQMASTIAASVHAE
VQHQLHVIVGNMQESILAQVQRVIKGEVSLAMKEQQAAVTSSIVQAMRSAAGTPIPSTHM
DFQSQQTHILQLLQQGHLNQAFQQALTAADLNLVLYVCETVDTQQVFGQHPCPLSQPVLL
SLIQQLSSDLGTRTELKLNYLEDAVMHLDQSDPITRDHMGSVMNQVRQKLFQFLQVEPHN
PLSKAARRLMIMLQGLVTPGMT
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atggcctcctgctccagcatcgacatcgaggacgccacgcagcacctgcgggacatcctc
aagctggaccggccgggaggttcagtgaatgagaaccagagaccatcaaattcctataac
ggggacctgaatgggctgctggtgcctgatccccttgggagcggagatggacctgctttg
gccaagccagtgcatcgcagcatctctctaggagccctgcaggagaaacaagtcatctgc
ctttctggtgatgacagctccacatgcttagtgatatcagcaaaagacgtggaggtagtg
gccagcagtgattccagcatcaccagtaaggccagagggagtaataaggtgaaaatacag
cctgttgctagatatgactgggagcagaaatactattatggcaatctgatagctgtttca
aactcttacctggcttatgccattagagctgccagcaatggctctgccatggtgcgggtg
ttgagtgtcagcactgctgagaggaccttgctgaagggattcacaggaggcgtggcagac
ctggcctttgctcacctcaactccaaccagctggcctgcctggacgaggctggcaacctt
tttgtctggcgcctggccatggataaagataaaatccaagaggagatcttggttaacatc
aagcgacctgacaatacccccttgaacaccttccggagaatcatctggtgccccttcatc
cccgacgacaacgaggagagcggcgaggagggaagtcagaccttggcattgttgcatgag
gacagggcagaggtgtgggatttggacatcatccgaaccaacaacagctcctggccagtg
gaagtgcctgatatcaaagaaggtttcattgtggtgaaaggccacagcacgtgcctgagc
gagggagcactttctccagatggaactgtgttggccacagcaagccatgatggttttgta
aaattctggcagatctatattgaaggacaggatgagccaagatgtcttcatgagtggaaa
ccccatgatggtagacctctttcctgcctgctcttttgtgacaaccataaaaaacaagac
ccagaagttcccttctggaggttcctcatcacaggagctgatcagaacagagagctgaag
atgtggtgcacagtgtcttggacctgtttgcagacggttcgcttttctcctgacatcttc
agctccatgactattcttcccagtctgaaagtctgcctggacctctctgctgaatatctg
atactgagtgatgtgcagagaaaagtcttgtatgtgatggagttgatgcagaaccaagag
gagggcaaggcttacttcagctccatctcagagttcctccttacccacccggtgctgagc
tttggcatccaggccgtgagccgctgccggctaaggcacaccgaggtgctcccagcagaa
gaggagaatgacagcttgagtgtagaaggtgctcagggctctggggctgttgaatcagca
gcaggtgtgctgataaaactcttctgtgttcacaccaaggccctacaggatgtgcagatc
aggttccaacctcttcatagccctgacacaagtgcttccatgcctgcccatagctctcat
gaagaatttgcttttccagaccacatgggtgatctgggcacggaagggctgggatctgaa
aaggagtctgtgcacggctcccagccagacctgcggcgcatcgctgatctgcctgtgcca
gcagacttcctttctctctccagtgatgccaaacccaagctgatgactccagatgcattc
atgacaccaagtacttctcttcaacagatcgctgtctctccgggcagcagtgtcagttcc
ctgactgcagtcacagccatgagcagcacttctgtcacagatacctctctgcccagagct
tcagaagacttgactgtgagccccaagatgcagctggacaccagcctcacgctgagcagc
agcagcagcagtctccagaccagtcctaggagtcactctgttcttatcccaggcctccct
gacaagctaacaccaaaggcacctgttccagtcgccccaggaaactcctctctagcactg
gaactgcaggaagtggagcccttggtggtgccccaggcttctcccacccgtgagcgctct
ccagatgtcatttcctctgcttccactgccatgtcccaggatatcccagagattgcttcg
gagacgctgcagcgcagctttgcggcggccccggccgggctcccgggggaggtgctggag
cccgggcaccacgcagacagtatggcctcagctgcctctgccttgcacctgctgtctccc
aggaaccgccacaactctgagcacagccaccactctttggacatgcctccagtggaggtg
gacagactgaacgctccatcgttactggagactgctttaactcaggaaaatgcatcttct
gacagtgttgtgagtcagccatggccagcggctcctgacataacccgggaaaccaggaac
agcatggcagacagtccaagggatgaggttgaagaaaagcacaagagctcttcctaccat
cgacacagctaccaccttctgcagcatgacagccaggatgccagtgcagaacaaagtgac
catgatgatgaagttgcaagcttggcttctacgtcaggtggatttggtgccaaagcatct
gcgcagaggctgcctgtgaaggactggaaggtcaaggcatccccccgggcttccccaaag
ctgaagcgcaaggccaagaaggatgacggggatataaaccagtcaccaagatcatctaac
aaccaggtgacagcagagttccaggatgaggtgatgtgcatcctgaggggccagcagcgg
gagctctccgagctgcggcagaaccagatggagctgctgcagagactcacggatcacctc
gatgccatccagagctccctcatgggccacatggagagggtgatcgactcccagcaggag
caggagcagagaagactggaccgggtgctgatggaagggcagcagcgcaatgggcagctc
caggagcacctgtcccagcagctctcccagtccctgtccgcagctgtgtgcaaccgtctg
gagaggaccattcgggaggagatgaagaagacagtgccccagtgcatttccaagagcatg
gaccctactgtcagccagctcagtaatactattgctaccaagctcactgctgttgagggg
acactgaaagagaatattaccaagctggtgaaatcaaagaaccttacagacagtgttgtg
agggccacagctgacactctgcagggacccatccagtcagcctacagggaggccttccag
agcgtcgtgctgccagcctttgagaagagctgccagtccatgttccagcaaatcaatgac
accttcaagcagggcacacaggaatatatccagcagctggaggctcacttgaagaacaag
aaggcacgagagcaggaggtgcgggagccgctgctgaaccagctgcggcagctcctcagc
accttccagagcaccacggagcagatggcgtccaccatcgcggccagcgtccacgccgag
gtgcagcaccagctgcacgtcatcgtgggcaacatgcaggagtctattttggcccaggtg
cagagagtcattaaaggagaagtgagcctggccatgaaggagcagcaggcagccgtcacc
tcgagcatcgtccaggcaatgcgctcggcagccgggacgcccatcccctctactcacatg
gatttccagtcccagcagactcacatccttcagctgctgcagcagggacacctcaaccaa
gctttccagcaggctctaacagcagctgatctcaacctggttctatatgtctgtgagact
gtggatactcagcaagtatttggacagcatccatgcccgctgtcccagcctgtgctgctc
tccctcattcagcagctctcctcagatctgggcactcgtacagaactgaagttgaactac
ttggaggatgcagtgatgcaccttgaccaaagcgaccccatcacccgagaccacatgggg
tcagtcatgaaccaggtgcggcaaaagctcttccagttcctgcaggtggaaccccacaac
cctctgagcaaggctgcgcgtcgcctcatgatcatgctccagggcctggtcacccctggc
atgacctag
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integrated database retrieval system
