Lonchura striata (white-rumped munia): 110476962
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Entry
110476962 CDS
T05897
Symbol
CACNA1B
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04010
MAPK signaling pathway
lsr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110476962 (CACNA1B)
04020 Calcium signaling pathway
110476962 (CACNA1B)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsr04040
]
110476962 (CACNA1B)
Ion channels [BR:
lsr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110476962 (CACNA1B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
110476962
NCBI-ProteinID:
XP_021397955
LinkDB
All DBs
Position
17:complement(4254477..4567225)
Genome browser
AA seq
2358 aa
AA seq
DB search
MARFGDDLPTRYGGGGPAGAGRGSSRQGGPQAAQRMYKQTMAQRARTMALYNPIPVKQNC
FTVNRSLFIFSEDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHLPDGDKTPMSE
RLDDTEPYFIGIFCFEAGIKIIALGFVFHKGSYLRNGWNVMDFVVVLTGILATAGTDFDL
RTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFAIIGLEFYMGK
FHKTCFSNETGEEVGDFPCGEEPPARQCESGTTCREYWQGPNYGITNFDNILFAVLTVFQ
CITMEGWTDILYNTNDAAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEFAKERERVENR
RAFLKLRRQQQIERELNGYLEWIFKAEEVMLAEEDKNAEEKSPLDVLKRAAIKKSKNDLI
HAEEGEDHFTDICSVGSPFARASLKSGKNESSSYFRRKEKMFRFFIRRMVKAQSFYWVVL
CVVALNTLCVAMVHYDQPEKLTTALYFAEFVFLGLFLTEMSLKMYGLGPRNYFHSSFNCF
DFGVIVGSIFEVIWAAVKPGTSFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSI
ISLLFLLFLFIVVFALLGMQLFGGQFNFQDETPTTNFDTFPAAILTVFQILTGEDWNAVM
YHGIESQGGVHSGMFSSIYFIVLTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEMEEAT
NQKLALQKAKEVAEVSPMSAANISIAAKQQNSSKSKSVWEQRTSQIRMHNFRASCEALYN
ELDPEERVRYATTLHIRPDMKTHLDRPLVVEPRGEGRNNITKLSPADVQEVVEHPKPTSA
DGAEAPRKHHRHREKEKLGEQEKGDVTKEESGEAGAGNKEERHRQHRSRSKEVEGGSKEG
KSDRNRGQEGGKRHHRRGSVEEGAEKEHRRHRSHRHSSDRPAKEGNGTANGARGERRSRH
RGGSRSGNRDGEPGAKGDSGEEPHRRHRLRNRALATYESVEKDGGEKEGEAGEKERRNHQ
PKENQCELEASGSGSGPGGVPVHTLPSTYLQKVPEQPEDADNQKNVTRMIQPPLDKTTTV
NIPVTITAPPGETTVIPMNNVEFESKPEEKKDVDDLTKNGPKPILPYSSMFILSPTNPIR
RLFHYIVNLRYFEMVILIVIALSSIALAAEDPVQAESPRNDALKYLDYIFTGVFTFEMVI
KMIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFAFSGTKGKDINTIKSLRVLRVLRPLK
TIKRLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGRFFYCTDESKELEK
DCRGQYLDYEKNEVEAQPREWKKYEFHYDNVLWALLTLFTVSTGEGWPTVLKHSVDATYE
EQGPSPGYRMEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKVMSECSLEKNERACI
DFAISAKPLTRYMPQNKQSFQYKMWKFVVSPPFEYFIMVMIALNTIVLMMKFYDAPEAYE
EMLKCLNIVFTSMFSMECVLKIIAFGVLNYFRDAWNVFDFVTVLGSITDILVTEIADTDN
FINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQV
FGNIALDDETSINRHNNFRTFLQALMLLFRSATGEAWHEIMLSCLSNRACDPLSGLTKKE
CGSDFAYFYFVSFIFLCSFLVSQPDPTKGGCWCGSPKPFPPHPYARQQRSLFSCLLSLLS
LSPPFHLLHCVALPPHPFPMFPASIRWDFCVLVLLPHPCGPSGRISYTDMYEMLRHMSPP
LGLGKKCPARVAYKRLVRMNMPISPEDLTVHFTSTLMALIRTALEIKLASGGVKQHQCDA
ELRKEISLVWPNLSQKTLDLLVPPHKPDEMTVGKVYAALMIFDFYKQNKNSREQVQPPGG
LCQPGPVSLFHPLKATLEQTQPAAFSNAKAFLRQKSSASLNNGGALPPPEGGIKESSSWG
TQRTQDVFYETRSPAFERGHSEEIPIERVVEMKEISPTVANGEPQPGLESQGRAASMPRL
AAETQPIPDTSPMKRSVSTLAPQRPHAMHLYEYSLERMPPEQGHHHHHHRCHRRKEKKQK
SVDRAAHHLADGQAVAQSGESSSKDKKQERGRSQERKQHSSSSSEKQRFYSCDRYGSRDR
AQPKSADQSRPTSPNGGPEHGPHRQGSGSVNGSPLLSTSGASTPCRGRRQLPQTPLTPRP
SITYKTANSSPVHFTTFQTPTFSPGRLSRGLSEHNALLRGEQQPPPPAVARIGSDPYLGH
RAAASPQRAAPEDTLTFEEAVATNSGRSSRTSYVSSLTSQSHQIRRVPNGYHYTLGLNTG
PGARGRSYYHEADEDDWC
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atggctcggtttggggatgatctgccgacccgctatggaggtggagggccggccggggct
ggaagagggagcagccggcaaggtggcccccaagccgcccaaaggatgtataaacagacg
atggctcagagagccaggactatggctctctacaaccccatccctgtcaaacagaactgc
ttcacagtcaacagatccctcttcatcttcagtgaagataatgttatacggaaatacgcc
aagcgaataacagagtggcctccatttgaatatatgatattagctacaatcatagccaat
tgtattgtgctggctctggaacaacatttgccggatggagacaagacaccgatgtcagaa
agattggatgacactgagccgtactttattggaatattttgttttgaagctggtatcaaa
atcatcgctctgggctttgttttccacaaaggctcttacctgcgcaacggctggaacgtg
atggattttgtcgtggtcctcacagggattctggcgaccgctgggactgactttgacctg
cggacgctgcgtgccgtgcgggtgctgcggcccctgaaactcgtctcggggatcccaagc
ctgcaggttgtcctcaagtccatcatgaaggccatggtgcccttgctgcagattgggctg
ctcctcttcttcgccattgtgatgtttgccatcatcgggctggagttttacatgggcaag
ttccataaaacctgcttttccaacgagacaggtgaggaggtgggggattttccctgtgga
gaggagcctcctgccaggcagtgtgagagcgggaccacgtgcagggagtactggcagggc
cccaactatggcatcaccaactttgacaacatcctcttcgccgtgctcaccgtcttccag
tgcatcaccatggagggctggaccgacatcctctacaacacaaacgacgctgcagggaat
acctggaattggctttacttcatccctctcatcatcattggctctttcttcatgctcaac
ttggtgctgggcgtcttatcaggcgaatttgccaaggagcgagagcgggtggagaaccgc
cgcgcgttcctgaagctccgccggcagcagcaaattgagcgggagctcaacgggtacctg
gagtggatcttcaaagcagaggaggtgatgctggccgaggaggacaagaacgcggaagag
aagtcccctctggacgtgttgaaaagagccgcaataaagaagagcaaaaatgacctgatt
catgcagaagaaggtgaggaccatttcacagacatttgctccgttgggtctccctttgcc
cgcgccagtttgaagagtgggaagaacgagagctcgtcctacttcaggaggaaagagaag
atgttccgcttcttcatccgccgcatggtgaaggctcagagcttctactgggtcgtgctc
tgcgtggtggccctcaacaccctctgtgtggccatggtgcactatgaccagcccgagaag
ctgaccactgctctctatttcgcagagttcgttttcctggggctgttcctcactgagatg
tctttgaagatgtatgggctggggccaaggaattacttccactcttcattcaactgcttt
gactttggggtgatcgtgggcagtatttttgaggtcatctgggctgcggtgaagccgggc
acctcctttggcatcagcgtcctgcgagccctgcggctgctgaggatcttcaaagtcacc
aagtactggaattccctgaggaatctggtggtctccttgctgaactccatgaaatccatc
atcagcttgcttttcctgctgttcctcttcatcgtggtctttgctctgctggggatgcag
ctcttcggagggcagttcaatttccaagatgaaactccaaccacgaattttgataccttc
cctgctgccatcctcacagtgttccagatcctgacgggggaggactggaatgctgtgatg
taccacgggatagagtcgcagggcggcgtccactcgggaatgttctcctccatctacttc
atcgtcctcaccctctttggtaactatactctcctgaacgtcttcttggccatcgctgtg
gacaacctggccaacgcccaggagctgaccaaggacgaggaggagatggaggaagccacc
aaccagaagctggccctgcagaaggccaaggaggtggccgaagtgagccccatgtcggcg
gccaacatctccatagcagccaagcagcagaattcctccaaatccaagtcggtttgggag
cagaggacgagccagatccggatgcacaacttccgagccagctgcgaggcgctgtacaac
gagctggaccccgaggagcgggtccgctacgccaccaccctgcacatccgacccgacatg
aaaacccacctggaccggccgctggtcgtggagccccgcggcgaaggcaggaacaacatc
accaagctgagccccgcggatgtccaggaggtggtggagcaccccaaacccacctccgcc
gatggggcagaagcgccacggaagcaccacaggcatcgggagaaggagaagctgggcgag
caggagaagggagacgtgaccaaggaggagagcggcgaagccggggccggcaacaaggag
gagcggcaccgacagcaccggagccgcagcaaggaggtggaagggggtagcaaggaaggg
aaaagcgaccgcaacagggggcaggaaggggggaagaggcaccaccggcggggctcggtg
gaggaaggggccgagaaggagcaccgcaggcaccgcagccaccggcactcgtccgaccgg
ccggccaaggagggcaacggcaccgccaacggtgcccgcggcgagcggcgctcccggcac
cgcggcgggtcccgctccgggaacagggacggagagcccggcgccaagggcgacagcgga
gaggagccccaccggcggcaccggctcaggaacagggccctggccacctacgagtccgtg
gagaaggacggcggggagaaggagggggaggctggcgagaaggagcgccggaatcaccag
cccaaggagaatcagtgtgagctggaggccagtggcagtggcagtggccctgggggtgtc
cctgtgcacaccctgcccagcacttacctgcagaaggtgcctgagcagcccgaggatgcc
gacaaccagaagaacgtgaccaggatgatccagccccccctggacaaaaccaccactgtg
aacatccctgtcaccatcactgcccctccaggggagaccactgtcattccaatgaacaac
gtggagtttgagagcaagccagaggagaagaaagacgtcgatgacttgacgaagaatggg
cctaaaccaatcctgccttacagttccatgttcatcctcagccccacaaatccgatccgg
cgcctgttccactacatcgtcaacctgcgctacttcgagatggtgatcctgatcgtcatc
gccctcagcagcatcgccctggctgcagaggaccctgtccaagctgagtctcccaggaac
gatgctctgaaatacctggattatatatttacaggagtcttcacctttgagatggtgatt
aagatgattgatttggggctgctgctccaccctggctcctacttccgtgacctgtggaac
atcctggacttcattgtggtcagtggggccttggtggcttttgccttctcaggaaccaaa
ggcaaggacatcaacaccatcaagtccctgcgagtcctgcgcgtgctcaggcctctgaag
accattaaacgtctgccaaaactaaaggctgtctttgactgcgtggtgaactccctgaag
aatgtcctcaatatcctcattgtttacatgctcttcatgttcatcttcgctgtcatcgct
gtgcagctcttcaagggccgcttcttctactgcacagacgagtccaaggagctggagaag
gactgcaggggtcagtacctcgattatgaaaaaaatgaggtggaggcacagcccagggaa
tggaaaaaatatgagttccactatgacaacgtgctctgggctctgctcacgctcttcact
gtgtccacaggggaagggtggccaactgtgctgaagcactcggtggatgccacctacgag
gaacaggggcccagccctggctaccggatggaaatgtccatcttttacgtggtctatttt
gttgtcttcccttttttctttgtcaacatctttgtggcgttaatcatcatcaccttccag
gagcaaggagataaagtgatgtcagagtgcagccttgagaaaaacgagagggcctgcata
gactttgccataagtgccaagcccttgacccgctacatgcctcagaacaagcaatccttc
cagtacaagatgtggaaattcgtggtgtcccctccctttgagtattttatcatggtcatg
attgctctcaacaccatcgtcctcatgatgaagttctatgatgctccagaagcatatgaa
gaaatgctgaaatgcctgaatattgtgtttacatccatgttttccatggaatgtgtgctg
aagatcattgcctttggtgtgctgaattatttccgagatgcctggaatgtctttgatttt
gtaacagtgttgggaagtattactgatattttagtaacagagattgcggacacggacaac
ttcatcaacctcagcttcctgcggctcttcagggcagccaggctcatcaagctcctccgc
cagggctacaccatccgcatcctgctctggacattcgtgcagtccttcaaggccttgcct
tatgtgtgtctcctcattgcaatgctcttcttcatctatgccattattggcatgcaggta
tttgggaacattgccttagatgatgaaacctccattaatcggcacaacaacttccgcact
ttcctccaagccctgatgctcctgttcaggagcgctacaggggaagcctggcatgagatc
atgttgtcctgcttgagcaacagagcctgtgaccccctctctggcctcaccaaaaaggaa
tgtggcagtgattttgcctatttctacttcgtgtcattcattttcctctgctccttcctg
gtaagtcagcctgatcccacaaagggggggtgctggtgtggatcccccaaacccttccct
ccccacccctatgccaggcagcagagatctctgttttcttgtctgctttcccttctctct
ctctctcctccttttcatttgctccattgtgttgcccttcccccccaccccttccccatg
ttccccgcctcaatccgatgggatttctgtgtcctggtgcttttgcctcatccctgtggt
cccagcgggcgcatcagttacacagacatgtatgagatgctgagacacatgtccccacct
ctaggccttgggaagaaatgcccagctcgtgttgcctataagcgcctggtgaggatgaac
atgcccatctcccccgaggatttaactgtgcacttcacctccacgctgatggccctgatc
cgcacagccctggagatcaaactggcctcaggtggtgtgaagcagcaccagtgtgatgct
gagctgaggaaggagatctcgctggtctggcccaacctgtcgcagaagactctggatttg
ctggtgcctcctcacaaacctgatgaaatgactgtggggaaggtctatgcagccctgatg
atatttgacttctacaagcagaacaagaacagcagggagcaagtccagccccccgggggc
ctgtgccagcccgggccagtgtccctcttccaccccttgaaggccaccctggagcagacc
cagcccgcagccttcagcaacgccaaggccttcctgcgccagaagagctcggcctccctc
aacaacgggggagccttgccacccccagagggagggatcaaagagtccagttcttggggg
acccagcgcacccaggacgtgttttatgaaaccaggagcccagcttttgagcgaggccac
tccgaggagatccccattgagagggtggtagaaatgaaggagatcagccccacagttgcc
aacggggagccccagccaggcctggagagccagggcagggcggcctccatgccacgcctg
gctgctgaaacccagcccatcccggacacgagccccatgaagcgctcggtctccacgctg
gccccgcagcgccctcacgccatgcacctctacgagtattccctggagcggatgcctccg
gagcagggccaccaccaccaccaccaccgctgccaccggcggaaagagaagaagcagaag
tccgtggatagggccgcccatcacttggccgatggacaagctgtagcccagtctggagag
tcttcttccaaggacaagaagcaggagcgtggccgctcccaggagaggaagcagcactcc
tcctcctcctccgaaaagcagcgcttctactcctgcgaccgctacggcagccgggaccgt
gcccagcccaaatctgctgaccagagcaggcccacctcccccaacgggggcccagagcac
ggcccacacagacagggcagtggttcagttaatgggagccccttgctgtcgacatctggt
gctagtaccccctgccggggtcggaggcagctcccacagactccactgaccccacgcccc
agcatcacttacaagaccgctaactcctcgcccgtgcacttcaccactttccaaaccccc
acgttctccccgggccgcctgagccgcgggctgtccgagcacaacgcgctgctgcggggg
gagcagcagccgcccccgcccgccgtggcccgcatcggctccgacccctacctgggccac
cgcgccgccgccagcccgcagcgcgccgcgcccgaggacacgctcaccttcgaggaggcc
gtggccaccaactcgggccgctcctcaaggacttcctacgtctcctcgctgacctcgcag
tcgcaccaaatccgccgggtgcccaacgggtaccactacacgctggggctcaacacgggc
cccggcgcccgaggacgcagttactaccacgaagccgatgaggatgactggtgctag
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