Lonchura striata (white-rumped munia): 110477208
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Entry
110477208 CDS
T05897
Symbol
PNN
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03013
Nucleocytoplasmic transport
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110477208 (PNN)
03015 mRNA surveillance pathway
110477208 (PNN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110477208 (PNN)
03041 Spliceosome [BR:
lsr03041
]
110477208 (PNN)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
110477208 (PNN)
Spliceosome [BR:
lsr03041
]
Complex C
Other components
EJC/TREX
110477208 (PNN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
110477208
NCBI-ProteinID:
XP_021398401
UniProt:
A0A218VF35
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All DBs
Position
5:complement(23524621..23534678)
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AA seq
694 aa
AA seq
DB search
MAVAVRALQEQLEKAKESLKHVDENIRKLTGRDPNDVRPPQNRLLALAGPGGGRGRGSLL
LRRGFSDSGGGPPAKQRDLEGASSRLGGERRTRRESRQESDAEDDDIKKPALPSSVVATS
KERTRRDLIQDQNMDEKGKQRNRRIFGLLMGTLQKFKQESTVAIATERQKRRQEIEQKLE
VQAEEERKQVENERRELFEERRAKQTELRLLEQKVELAQLQEEWNEHNAKIIKYIRTKTK
PHLFYIPGRMCAATQKLMDESQKKMNALFESRRNEFAEQINKMEARPRRQSVKEKEHQEV
QKEEKKEEQNKEQEEGKVAQQVEEMETGNQHNDVEMEEVGEEKGKIGSGSGHSDAEKEQE
EDEQKHDMEMKVEEPTEVRENDKQQDGQHEEITVVKEESENIQPVDNEQDVAEMNEADSV
EPVENENGKEIEPETECDAQPEKVCHVPSPKKEKGIKTENNAELEDTQEKTPEAQTESVA
EALSQPQSVPLAQSPQLSQSTQDTEPQTDKDENAVVSVKVVEVQADQNETPSAESKSKTR
GRSRGRAGNKTGHTRSSSSSSSSTSSSTTSASSSSTGSSSSRSSSTSSSTTSGSTSRDSS
SSSSSSSESRSRSRGRGHNRDRKRRRSTDRKRRDASGVDRSHKSSKGGSRDTKGSKDKSS
RSDRKRSISESSRSGKRTSRSERDRKSDRKDKRR
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggcggtgcgcgctctgcaggagcagttggagaaagccaaggaaagcctcaag
cacgtggacgagaatatccgcaagctcacgggccgggaccccaatgatgtgaggccccct
cagaacaggctgttagccctcgcaggccccggtggaggtagagggcgtgggagcttattg
ctaaggcgtggattctcggatagtggaggaggacccccagccaaacagagggatcttgaa
ggtgcatccagtaggctgggtggagagcgtcggacaagaagagaatcacgccaagaaagc
gacgcagaggatgatgatattaaaaagccagcgttgccatcttctgttgttgctacctcc
aaagagcgaacacgtcgagaccttatacaagatcaaaatatggatgaaaaaggaaaacaa
aggaatcgacgtatatttggcttgttgatgggtactcttcaaaaatttaaacaggagtcc
acagttgctattgctactgagaggcaaaagagacgacaagaaattgaacagaaacttgaa
gtgcaggcagaagaagagagaaagcaagttgaaaatgagaggcgagaactgtttgaagaa
agacgtgctaaacagacagagctgcggttattggagcaaaaggttgagcttgctcagttg
caagaagaatggaatgaacataatgctaaaataattaaatacataagaacaaagacaaaa
cctcatttattctacatacctggcagaatgtgtgctgctacgcagaagctgatggacgag
tcacagaaaaagatgaatgcactctttgaaagcaggagaaatgaatttgcagagcaaatt
aacaaaatggaggccagacccagaagacaatctgtgaaggaaaaagaacatcaggaggtg
cagaaggaagaaaagaaggaagaacagaacaaggagcaggaagagggtaaggtggctcag
caggtggaagagatggagacaggtaatcagcacaatgatgtagaaatggaggaggtaggg
gaggaaaaaggaaaaataggttcaggttcagggcatagtgatgcagaaaaagaacaggag
gaggatgagcagaaacatgatatggagatgaaagtagaagagcctactgaggtgagggag
aatgacaagcaacaggatggtcagcatgaggagatcacagttgtaaaagaggaaagtgaa
aacattcagcctgtggataatgagcaggatgtggctgaaatgaatgaggcagatagtgta
gaacctgtagaaaatgaaaatggcaaagaaatagaaccagaaacagagtgtgatgctcag
ccagaaaaagtgtgtcatgttccttctcctaagaaggagaaaggtatcaaaacagaaaat
aatgctgaacttgaagacacacaggagaaaacacctgaagctcaaacagaatctgtggct
gaggctctatctcagccacagtctgtgccactagcacaatcacctcagttgtctcagtcc
actcaggatacagagccccagacagacaaggatgaaaatgctgtggtgtctgtaaaggtg
gttgaagtccaggcagaccagaatgagacaccaagtgcagaaagtaagagtaagactagg
ggtagaagcaggggtagggcaggaaacaaaactggtcatacccgtagcagcagcagtagt
agtagtagcacttcaagcagtactaccagtgcaagtagttccagtactggcagcagttcc
agtcggagcagttccaccagcagcagcactacaagtgggagtacgagcagggacagtagc
agcagtagctctagcagcagcgagagtagaagtcgaagccgaggcagggggcataacaga
gatagaaaacgcagaaggagcacagacaggaagcgaagggatgcttcgggcgtagataga
agtcacaagtcctcaaaaggtggtagtagagatactaaaggctcaaaggataaaagttca
aggtctgacagaaagagatctatatcagaaagtagtcggtcaggcaagagaacttcacgg
agtgaaagagaccgtaaatcagacaggaaagacaaaaggcgttaa
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