Lonchura striata (white-rumped munia): 110477371
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Entry
110477371 CDS
T05897
Symbol
PCDH12
Name
(RefSeq) protocadherin-12
KO
K16499
protocadherin delta 2
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lsr04515
]
110477371 (PCDH12)
Cell adhesion molecules [BR:
lsr04515
]
Cadherins
Protocadherins
110477371 (PCDH12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
110477371
NCBI-ProteinID:
XP_021398771
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All DBs
Position
13:1440573..1450520
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AA seq
1183 aa
AA seq
DB search
MPRRCGGAEDSAGMRWAAGQPMAARRGRGGSAGSVLGLSRSALRLPALWWWYLFLSADAQ
EVATFTVQYRVLEEVPPGTVIGSLAEHFEGGESGEAAETFQLMETPGRFPLHVGSGDGVL
STAGRVDREQLCRHSDPCWVSFNVLAAQNPALIHLEVQVMDVNDNAPQFPTPELELEISE
SASLRTRIPLDRALDADTGPNALCSYALSPSEHFALEVVPSSDGTRHAELVVVKEVDREL
HSSFDLVLTATDHGEPPKSGTALIKVIVLDSNDNSPVFADSSLMVEVREDAQPGTLLVTV
TATDPDQGPNGEIEYSLSRHAPPEVLSTFSIDARTGSILLRLPLDYEDTHTYELDVQARD
LGANPIPAHCKVLVRVLDVNDNAPDVHVTWAAREPVLSEALPKDSFVALVTASDPDSGTN
RQVLCSLSQGYEHFRLKRTNSHSFALLTNASLDRERRAEYNLTLVVRDMGDLSLAVLKHL
TICISDVNDNAPAFEKAVYEAAVDENSEAPSFLLTVRATDPDLGSNGKVTYRILDPSVLG
LVSVDPITGDIFALQAFDYEQLRSLEFLVTAEDGGHPKLASNISIRLAVLDRNDNAPIIT
MPVLVGGVATLSVLVNVDTGCCWVVPGNGSTQGAAAVTNATLISCPANPFLFRIMARDVD
SGINGALRYDLVGGDDAGLFILDPLLGQVSLNASNASSLAGSQRELLVRVSDQGDTPLHT
LARLRLLFRRHGAFSKMSAQDPGWPGLPVVLLICLAALLGGCVPLLALTLSLRKKDKKDG
MAYNCREAEDARRQQQLKKPHRQIQKADIHLVPLLRGRPRDPEPPRACLEEQPGTGSPAA
GGSPRASLHLTPTLYRTLRNQRTQKGSEEQQGTFELPVLQRRPCQPHRLKPPGKEAVGPP
EAALHGQSWAKPPVGEPRVPAEQPGAAGAAGQPQPHQQILRSLVRLSLVALAEQSPTGEF
AMESPPVQQISQLLSLLHQGQFQPKTNYRGNKYTAKNGSRAAGLDTGLDTGLDTGLDTDC
LSTKDSGHGESEAGDRDSDSAFELSVQQLVGEELETLLEPQAELALKRLTAADPAWVARL
SLPLTSSYKDNVFCPDSPCSPEDEEAARQEKPRTFETFGKGAAADPGGSGTRLASTFLSE
MSTLFEMILSQKVQAHGEAGAGLLRQLSARGHSLGLGDAAPGL
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgccgaggcgctgcggtggcgctgaggactctgcggggatgcggtgggcggcgggacag
cccatggcagcgcggcggggccgcgggggctctgccggcagcgtgctggggctgagccgc
tcggcgctgcggctgccggcgctgtggtggtggtacctgttcctgagcgccgatgcccag
gaggtggccacgttcacggtgcagtaccgggtgctggaggaggtgcccccgggaactgtc
ataggcagcctggccgagcacttcgagggcggcgagagcggcgaggcggcggagaccttc
cagctgatggagacccccgggaggttcccgctgcacgtgggcagtggggatggggtgctc
agcacggccgggcgggtggacagggagcagctgtgccgccacagtgatccctgctgggtg
tccttcaacgtgctggccgcccagaacccggccctgatccacctggaggttcaggtgatg
gacgtcaacgacaacgcgccgcagttccccacgcccgagctggagctggagatctcggag
agcgcatccctgcggacgcggatcccgctggatcgagccctggatgctgacactggcccc
aacgccctctgctcctacgccctctcccccagcgagcactttgctctggaggtcgttccc
agctccgatgggacgaggcacgcagagcttgttgtggttaaggaggtggaccgggagctg
cactcctccttcgaccttgtgctgacagccactgatcacggggagccaccaaaatcaggt
actgctttgattaaagtcattgtcctcgactccaatgacaacagccccgtgtttgcagac
agctccctgatggtggaggttcgggaggacgcccagcccgggaccctccttgtgacggtc
acagccactgaccctgaccagggtcccaacggggagatcgagtacagcctgagcaggcac
gcgccccccgaggtgctgagcaccttcagcatcgacgcccgcacgggcagcatcctcctg
aggctccctctggactacgaggacacccacacctacgagctggatgtgcaggcacgggac
ctgggtgccaaccccatcccggcgcactgcaaggtcctggtcagggtcctggacgtcaac
gacaacgctcctgacgtccacgtcacctgggccgcgcgggagcccgtgctgtccgaggcc
ctccccaaggacagctttgtggccctggtgacagccagcgaccccgactcgggaaccaac
aggcaagtgctctgctccctcagccagggctacgagcacttcaggctgaagaggaccaac
agccacagcttcgcgctgctgaccaacgcctcgctggaccgcgagcggcgcgccgagtac
aacctgacgctggtggtgcgggacatgggggacctgtccctggccgtgctgaaacacctc
accatctgcatcagcgacgtcaacgacaacgctccagccttcgagaaggcagtctatgag
gctgctgttgatgagaacagtgaagcaccttccttcctgctcaccgttcgtgccaccgac
cctgacctgggctccaacgggaaagtcacctacaggatcctggacccctctgttttgggg
ctggtctcagtcgatcccatcactggagacatttttgccctccaagcttttgattatgag
cagctgaggagcctggagttcctggtgacagcagaggatggagggcatcccaagctggca
tccaacatctccatcaggctggctgtgcttgatcggaatgacaacgcacccatcatcacc
atgccagtgctggtgggaggggtggccacgctgtctgtcctggtcaatgtggacaccggc
tgctgctgggtggtccccgggaatgggagcacccagggggctgcggcagtgaccaatgcc
acactcatttcgtgccctgccaaccccttcctcttcagaatcatggccagggacgtggac
tccggcatcaatggggctctccggtatgacctggtgggtggggatgatgctgggctgttc
atcctggaccccctcctggggcaggtgtccctcaacgccagcaatgccagcagcctggcc
ggcagccagcgggagctgctggtccgggtgagtgaccagggagacacccccctgcacacc
ctggcccggctccgcttgctgttccggcggcacggggccttctccaagatgtcagcgcag
gatcccggctggcccggcctccccgtggtgctgctgatctgcctggccgctctcctgggc
ggctgcgtgccgctgctggcgctcaccctgtccctgcgcaagaaggacaagaaggacggc
atggcctacaactgccgggaggcggaggacgcccgccggcagcagcagctcaagaagccg
cacaggcagatccagaaggccgacatccacctggtgccgctgctccggggccgcccccgg
gaccccgagcccccccgggcctgcctggaggagcagcccggcacaggcagccctgcggcc
ggggggtcccctcgggcttccctccacctcacccccactctctacaggacgctgaggaat
cagaggacacaaaagggctcagaggagcagcagggcaccttcgagctgcccgtgctgcag
cgccggccctgccagccccacagactcaaacccccggggaaggaggccgtgggcccgccg
gaggcagcgctgcatggccagagctgggcgaagccacccgtgggagagccccgggtgccc
gccgagcagcccggggctgcgggggcagccgggcagccccagccccaccagcagatcctc
aggagcctggtgcggctgtcgctggtggccctggcggagcagagccccaccggggagttc
gccatggagtcgcccccagtgcagcaaatctcccagctgctctccctgctgcaccagggc
cagttccagcccaaaacaaactacaggggaaacaagtacacggccaagaacggcagcagg
gctgcggggctggacacggggctggacacggggctggacacggggctggacacggactgc
ctgagcaccaaggacagcgggcacggcgagagcgaggccggggaccgcgactccgacagc
gccttcgagctctccgtgcagcagctcgtgggagaggagctggagaccctcctggagcca
caggcagagctggccctcaagaggctgacggctgcagacccagcgtgggtggcccggctg
tccctgcccctcaccagcagctacaaggacaacgtcttctgccccgactcgccgtgctcc
cccgaggatgaggaggctgcgaggcaggagaaaccgaggacctttgagacctttggcaaa
ggtgctgctgctgaccccggtggcagtgggacgaggctggccagcaccttcctgtcggag
atgagcaccctgtttgagatgatcctgtcccagaaggtgcaggcgcacggcgaggcgggc
gcggggctgctgcggcagctgtcggcccgcgggcacagcctgggcctgggggacgctgct
ccagggctctag
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