Lonchura striata (white-rumped munia): 110477541
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Entry
110477541 CDS
T05897
Symbol
ARHGEF12
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04270
Vascular smooth muscle contraction
lsr04625
C-type lectin receptor signaling pathway
lsr04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
110477541 (ARHGEF12)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
110477541 (ARHGEF12)
09153 Circulatory system
04270 Vascular smooth muscle contraction
110477541 (ARHGEF12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110477541 (ARHGEF12)
Membrane trafficking [BR:
lsr04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
110477541 (ARHGEF12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
PDZ_Tricorn
Motif
Other DBs
NCBI-GeneID:
110477541
NCBI-ProteinID:
XP_021399061
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All DBs
Position
24:2592708..2672807
Genome browser
AA seq
1515 aa
AA seq
DB search
MSGTQSTITDRFPLKKPSRHGSILSRESPADKKQKVERCSSTHDFDPTGLVQRCVVIQRD
ENGFGLTVSGDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIKSGS
YVALTVQGRPPGSPQIPLADSDVDLAAFGHMSPIMASPHSPGTSGNAERITSPVLMGEEN
NIVHNQKVEILRKMLQKEQERLQVLQEEYSRAPSTRLLKEIQEAKKHIPQLQEQLSKATG
CTQDGVLSSRSVSESLQISEGEAESGDSGSKLDFSGDSPSRPNSDIADSPRSGLKERIYP
DESPEKAELQDTDSQSSVGSPLSRVGTQIIGAEDDDFDTEQEQINGQCSCFQNIELLKSR
PAHLAVLLHHVVSQFDPAALLCYLYTDLYKQTNSKETRRIFLEFYQFFLDRAANLKVPVP
EEISLELDRRRPELLPEELHRQFIQTMQDKVCPEVQRNLEDFRQKRSMGLTLAEGELSRL
DAERLRDRNAVEKERSCAEQILAKIEEVLMTSQPLEEDKSSTMQYVILTYMKHLGVKVKE
PRNLEQKRGRIGFLPKIKQSIKKEKEGEEKGKRRGFPNILGPPRRPSRHDSSAIGRAMEM
QKPRHPKHSPTASSVSPEPPESSKMRQSGSSSDGTDAPYPPANPMSPLATGPFASPEGSK
DSDTGVKQPGEAPPASDSMDGTPRTPNNTFEFPSPLENLQEEEGESERMVDMGTPKPFRK
MDSVGFADVQSEDELYDFDMDMDPPNWQQLVSREVLMGLKPYEIKRQEVINELFYTERAH
VRTLKVLHNVFYQRVTREGILSSSDKRKIFSNLEDILGLHVALNDQMKSVRKRNETSVIG
QIGEDLLSWFSGAAEEKLKLATATFCSNQPFALEVIKSRQKKDSRFQTFVQDAESNPLCR
RLQLKDIIPTEMQRLTKYPLLLDNIAKYTELPEEKEKVKKAADHCRQILNHVNQAVKESE
NKQHLEDYQRRLDLSYLKQSEDPMMDEFRNLDLTKRKMLHEGPLTWKVNRDKTIDLYTLL
LEDILVLLQKQDDKLVLKCHSKILASTADSKHTFSPIIKLNTVLVRQVATDNKAFFVISM
SATGAHIYELVAQTVSEKNVWQDLIAQMAGTVKMGSSRRVIPLPQSGPGEEEREEEEQQK
LKEQHDIPASSLQSPDKDLGLESPLILNPQSSSPIMSEKAKVEGLLGAEAQFEKVQQAEL
ALKDSSACYEHPASSSASVPEGQWARDALRNLGLLRQLLVQQLGLAEKGPLEDRQRLPRF
RTVSQEAQTESGNELQPPESKSQQPGEDGSLGRTGAAAGGHGARAAAECPEPAARGALPM
DSTNLEGSSSELEGLGAEESGERFFDAREAHSDENPGESELLGRKDEEEDEEEEEEEVQI
RISGNYLILDGYGAVQESSTDEEVSALVLQCTSHQQPALGCPQQQQQQPLSPRDARSDGG
SSPFPEELRWPGLEEPCPFLGSPQLPLQIRVQLMQYIHNIEDALEKLKEVEEDYSVLRRQ
GLAGSASTGEHSDKS
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgagtggcacacagtccacaatcacggacaggtttcctctcaaaaaaccttcgagacac
ggcagcattctgagcagagagtctccagcagacaagaagcagaaggtcgagcgctgcagc
agcacccacgacttcgatcccacaggcctggtgcagaggtgtgtggtgatccagcgggat
gagaacggcttcgggctgacggtcagcggggacaaccccgtcttcgtgcagtctgtcaag
gaagatggagcagccatgcgggctggagtgcagacaggtgatagaattatcaaggtgaac
gggactctggtaacacactcgaaccatttggaggtggtcaagctgatcaagtcgggttcc
tatgtagctctcactgtccaggggcgccctccaggctcgccccagattcccttggcggat
tccgacgtggatctggcagcttttgggcatatgtctcccatcatggcatccccccactcg
cctggcacgtcagggaatgcagaaaggatcaccagcccagtgctcatgggggaggagaat
aacattgtccacaaccagaaggtggagattctgaggaagatgctccagaaggagcaggag
aggctgcaggtcctgcaggaggagtacagccgagccccctccacccgcctgctcaaggag
atccaggaggcaaagaaacacattcctcagctgcaggagcagctgtccaaggccacgggc
tgcactcaggatggagtcctgtcctccaggtctgtgtcagagtcactgcagatcagcgag
ggggaggcagagagtggggacagcggcagcaaactggatttcagtggtgacagcccctcc
agacccaacagtgacattgctgatagccctcgcagtggcctgaaggagaggatttatcca
gatgagagcccagaaaaggctgagcttcaagacactgactcccagtccagtgttggcagt
cccctgtcccgagtggggactcagatcattggggcagaggatgatgattttgacacggag
caggagcagattaatgggcagtgcagctgcttccagaacatcgagctcctgaaatcccgt
cctgctcacctggctgtcctcctgcaccacgtggtgtcccagtttgatcctgcagcactg
ctgtgctacctttacacagacctgtacaaacagaccaactccaaagagacccggcgtatt
ttcctggagttttaccagtttttcctggacagagctgcaaacctgaaagtcccagttcca
gaggaaatctccttggaattagacaggagaaggccagagctcctccctgaagagctgcac
cgccagttcatccaaaccatgcaggataaagtctgtccagaggttcagaggaacctggaa
gatttcaggcagaagaggagcatggggctgaccctggccgagggggagctgagcaggctg
gacgcggagcggctccgcgaccgcaacgccgtggagaaggagaggagctgtgcggagcag
atcctggccaaaatcgaggaggtcctgatgacatctcagcctctggaagaagacaagagc
tccacgatgcaatatgtgatcctcacctacatgaaacacctgggagtgaaagtcaaagag
cctcggaacctggagcagaagcggggccggattggtttcctgccaaaaatcaagcaaagc
atcaagaaagagaaagaaggagaggagaaagggaagaggagaggcttccccaacatcctg
ggccccccaaggagaccaagccgacatgacagcagtgcaattggcagggccatggagatg
cagaagcccaggcaccccaagcactcgcccacagcctcttctgtgagcccagagcccccc
gagtccagcaagatgcgccagagcggctcctccagcgatggcacagatgccccttacccc
cctgccaaccccatgtcccccctggccacggggcccttcgcctctccagagggcagcaag
gacagtgacacaggtgtgaagcagcctggggaagccccacctgccagtgactccatggat
ggcaccccccgcacacccaacaacacctttgagttcccatctcctctggaaaacctgcag
gaggaggagggagagtctgagaggatggttgacatgggaacgccaaaaccttttcgcaag
atggacagtgttggctttgctgatgtgcagagtgaggatgagctctatgacttcgacatg
gacatggaccctcccaactggcagcagcttgtgagcagggaggtgctgatggggctcaaa
ccctacgaaatcaaacgtcaggaagtgataaatgagctgttctacaccgagcgagcccac
gtgcgcacgctgaaggtcctgcacaacgtcttctaccagagggtcaccagggagggcatc
ctcagctccagtgacaagcggaaaatcttctccaacctggaggacatccttgggctgcac
gttgcactgaacgatcagatgaaatctgtccgaaaaaggaacgagacttctgtcattggc
caaattggggaagatttgctctcctggtttagtggagcagcagaggagaagctgaaactt
gccactgccaccttctgcagcaaccagcccttcgctctcgaggtcatcaagtcccgccag
aagaaggactcacgcttccagaccttcgtgcaggatgctgagagcaatcccctgtgccgg
cggctgcagctgaaggatatcatccccacggagatgcagaggttgactaaataccccctt
ctgctggataacattgctaaatacacagagctgcctgaggagaaggagaaagtcaagaaa
gcagcagatcactgtcgccagatcctcaaccacgtgaaccaggctgtcaaagagtcggag
aacaagcagcatttggaggattatcagcggagactcgacctctcctacttgaagcagtca
gaggatcccatgatggatgagttcaggaacctggatctaacaaagagaaagatgctccat
gaagggcccctgacctggaaggtgaatcgtgacaaaaccatcgatctgtacactctgctg
ctggaggacatcctggtgctgctgcagaaacaagatgacaaactggtgctgaagtgccac
agcaagatcctggcatccacagctgacagcaaacacaccttcagccccatcatcaaactc
aacactgtgctggttcgccaggtggccacagataacaaagctttcttcgtcatctccatg
tcggcgacgggggctcacatctacgagctggtggcacagactgtctcagagaagaatgtc
tggcaggaccttatagctcagatggcaggaactgtaaaaatggggagcagcagaagagtg
atcccactgcctcagtcaggccctggcgaagaggagcgtgaggaagaggagcagcagaag
ctcaaagagcagcatgacattcctgccagcagcctgcagagtccagataaagatttgggc
ctggagtctcccttgatactgaaccctcagtcctcttcacccatcatgtccgaaaaggcc
aaggtggaagggctgctgggggctgaggcacagtttgagaaggtgcagcaggcagagctg
gcactgaaggactcctctgcctgctatgagcacccagccagcagctcagcctcggtgccc
gaggggcagtgggcacgggatgccctgaggaacttggggctgctgaggcagctcctggtg
cagcagctgggcctggccgagaagggacccctggaggacagacagcgcttgcccaggttc
aggaccgtgtcccaggaagcccagacagagagtggcaacgagctgcagcctccagagagc
aaatcccagcagcctggagaggacgggagcctcggcagaactggagcggccgcgggcggg
cacggcgcccgggctgccgccgagtgcccggagcccgctgccaggggcgctttgcccatg
gacagcacgaacctggagggctccagctccgagctggaggggctgggggctgaggagagc
ggggagcgtttcttcgatgcccgggaagctcacagcgacgagaaccccggcgagagcgag
ctgctgggcaggaaggacgaggaggaggatgaggaggaggaggaggaggaggtgcaaatt
cggatctcaggaaattatttgatcctcgatggctacggagccgtgcaggagagctccacg
gacgaggaggtgtccgccctggtcctgcagtgcacctcccaccagcagcccgccctgggc
tgtccccagcagcagcagcagcagcccctgtccccccgggacgcgcgctcagacgggggc
agctcgcccttccccgaggagctgcgctggccagggctggaggagccctgccccttcctg
ggcagcccccagctcccgctgcagatccgagtgcagctcatgcagtacatccacaacatc
gaggatgccctggagaagctgaaggaggttgaggaggattacagcgttctgcggcgccag
gggctggctggctcagcctccacaggagagcactcagacaaaagctag
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integrated database retrieval system
