Lonchura striata (white-rumped munia): 110477566 Help Entry 110477566         CDS       T05897                                  Symbol SPG11 Name (RefSeq) spatacsin   KO K19026   spatacsin Organism lsr  Lonchura striata (white-rumped munia) Brite KEGG Orthology (KO) [BR:lsr00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:lsr03400]     110477566 (SPG11) DNA repair and recombination proteins [BR:lsr03400]  Eukaryotic type   DSBR (double strand breaks repair)    HR (homologous recombination)     Other HR factors      110477566 (SPG11) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Spatacsin_C Motif Other DBs NCBI-GeneID:  110477566 NCBI-ProteinID:  XP_031361618 LinkDB All DBs Position 10:20561018..20594665 Genome browser AA seq 2912 aa AA seqDB search MAAARAELRVLLAPGSGQAREALRARLSRARHALGTVLRGGGIRLEALGPGGPGRAAGSV LPGAWADFVWDSSEEDGLQSHKIKLLALAQSHDLFVYEFSVEDGKHNPNPLHSCKAQTLT KLLEAKSISLPSIFSVKILSFGNNKCKLLLNQFILVHLTFPGEDSPPETCGCFPLAVPAG AVGRITDSQFCRGILFLLDPAGWIYIFDCSDGATLGKVGVALGAGQGQGPAPVSPLAALA VSPDLSTAVVTDSCQRALAVQLNTYFRQFPEHLLCKRDPENLPVKPAEGLDEDDLASSEH SMELLSLPFRTDRSWKAHLSSLWDRVRRRRTQGSPDLVTDLNLPWYQFFTHLEDHDPEVC EDPERMVAFVPRAVTRAASPALQRQAAAPGAAAQQWAQIPVGAGQEMVKLECKLVTGAKA VFVLQAQDTGLSLALWDFESQDVTCSHFGRSSVYVECSAEVPLCLLLTERGLSLVLFGVT REEFLSRLLTFGSAGVVDSVCHLNGWERCSIPIHALEAGLENRQLDTVDLFLKSKESVLS LSAACPGPEQPGGAASQSYLTNLEELRPALNLLCSAIRDNDLEPHSKHFSEQLLNLTLTF LTKQLEEIFVHTEEPDEFLQKAADILTDYIIKLRKFLRKYPHPVMAPGHTGAELDEDLPE IEESKEWEKLTPEEVIADAILSNKIPEAQMFFRRQQHPAESLQELIQTGLSLVYARLLKG SPREASELLRNMGLDVKQELHKICLHTQDRHVRELLVKVLQEENYFSEEEKKIIDFVHQV ESLYSESFQENEDTLSLSRGSQLGWGSPAAPRLTLTLSWALCWDQLLQELLLLPRRARQE LKSCSPEVLWMHLTAQHDWLSVCSWIEESEPSQAPRDPAAWPPLSPDIVDRSTLCSPYMR QDILNKLARKGIFVRSELEDFELLLQRLSCLGGVLQNPHPVPKYSTASGLDFHAQFVLHC LQHSLQYLLYTYLDYYSLTPSNCPVLDNKELQEAHPWFEFLVQCRGVASNPRDPKMIFQA SLANAQMLIPSSQGGVNSILLEGRTLLALATTVYGPGGIDQVLQNEDAEKPLKKVDPQLL KMALGPYPKLKAALFPSCTAHGILPPDISLYHLLQSLMPFDPRKLFGWQSTNTLAASDAW SELPHFSSPQLLSRHAVLESLDFLFYLLQGRPAFAFGTFLGQQLARSKAPRQLIQRAARE ARLLALCSFGVPGVAAACVCFLELLGQDSLGLRVGLRAASLIARHGPSRDSLVEKLTKLA DGEKAAAAALLTSLEEAFWDAIEQQGIKRTSSDSRRQWSLVMQFCKLHNLELSTSFLREC AKSNEWLQFLIQSQLHGHQPAQVLPLLQEFPAVLRDHLELALGKLLGPGAAGGARGAAGS ARGAAGSARAGSVFRVLLRCQEQPSPCCCLLAEGLRAQAPILSVLAACCPGANLISCLCV WILTSVDDATRAEATAHTQGWAEGARWDLQDLAAIWKVFLRKQKSKTLLNGFRLFLKDSP LLHILEMYELCMNCKKYNEAKTKLDKFQESLTNPGAAGGAAPALPLPWLRSQALFLLELM LQQCHTDYELGKLLQLFAAAETPLLDGPHLKRLCALSEALRDSSISISRSILSSCSLEAF QGECSSILEQLQERGMFSLAREVAALAELPVDGVVTHEVLRDLHHLRDTGQWHQTQTRAE FWKKCNDTFTKHGIRSRAAAEFFLRQANGARESWGQEERAALVERELLLTLAGHWLAKEP GLPVQELEELEKQIWLCRVAERALPAEAAGPCPGTATLASLARRFSFAGLPALTAAGCHG LSAPARGEPRVAPGTEELGTEEQPQLGTEEQPQLGTAAPGTEEQPQLGLGTAAPGTEEQP QLGPAERAALAALLGALLDQGSVQEAARVCRYFQLWHRDVALALRCRALALGEARPEPEV PAPLTDTAGTAPGTSSLEDWTPLGCGDDAVVAALKALAEECVHGRGYCRQVLCLYELSKV SPGPCPALLALGRAGEGRKSLAGALKELQRVEFQPFVWEKARSFLGMSAEVSLGTAGVRL QVLSHPPGCSPHFHACTFXAPALPLPWLRSQALFLLELMLQQCHTDYELGKLLQLFAAAE TPLLDGPHLKRLCALSEALRDSSISISRSILSSCSLEAFQGECSSILEQLQERGMFSLAR EVAALAELPVDGVVTHEVLRDLHHLRDTGQWHQTQTRAEFWKKCNDTFTKHGIRSRAAAE FFLRQANGARESWGQEERAALVERELLLTLAGHWLAKEPGLPVQELEELEKQIWLCRVAE RALPAEAAGPCPGTATLASLARRFSFAGLPALTAAGCHGLSAPARGEPRVAPGTEELGTE EQPQLALGTAAPGTEEQPQLGPAERAALAALLGALLDQGSVQEAARVCRYFQLWHRDVAL ALRCRALALGEARPEPEVPAPLTDTAGTAPGTSSLEDWTPLGCGDDAVVAALKALAEECV HGRGYCRQVLCLYELSKDLGCSFAELAAREPREVLAAILARRGPGRGRRAQAFIACQGLP PATVAPLLALQVTQELLASAQGKGQKQVWNPAVESQELLELAKLCQDHTLVGMQLLDKIS SVPRGELSCITELLILAHSCFSLTCHMEGITRVLQAARLLTEEHLAPREEYGLVVRLLTG IGRYNEMTYIFDLLHQKHYFEVLMRKKLDPGGTLKAALLDYTKRCRPGDSEKHNMIALCF SMCREIGQNHEAAACTQLKLIECQPWGTAGLWALRDAPRFPWKLSAALLQDSCVRQALRC RRLTRLITLQLHFLGSGQSTRIINLGRQDLPGAILALPRFYQAAIVAEAYEFLPDWAEVL FQQVITRGDFVYLEEFRQQRPLQPGLFEEVAKKVKQQPPADAALRNLKRFLTHCEDIYTY YRLAYEHKFYDVVNSLLKDPQTGCCLNDLLST NT seq 8739 nt NT seq  +upstreamnt  +downstreamnt atggcggcggcccgggccgagctgcgggtgctgctggcgcccggctcggggcaggcgcgg gaggcgttgcgggcgcggctgagcagggcccggcacgccctgggcaccgtgctgcgcggc ggcgggatccgcctggaggcgctggggcccggcgggcccgggcgggccgcgggcagcgtc ctgccgggagcctgggccgacttcgtgtgggacagctccgaagaggatggtttgcaatcc cacaagataaaactcctggctcttgctcaaagccatgacctgtttgtctacgaattcagt gtagaagatggaaaacacaacccgaatcccctgcacagttgcaaggcacagacgctgaca aagctccttgaagctaaaagcattagtctgccttcaattttctctgtgaagattctgtcg tttggaaacaacaagtgcaaacttctgctcaaccagtttatcctcgtgcacctgaccttt cctggggaggactcgcccccagagacgtgtggctgcttccccctggctgtgcctgcagga gctgtggggagaataacagactcccagttctgcagggggatcctgttcctgctggaccct gctggctggatttacatatttgactgctctgacggtgccaccctggggaaggtcggcgtg gccctgggtgctgggcaggggcagggcccagcccccgtgtcccccctggctgccctggca gtgtcccctgacctcagcacggccgtggtgaccgacagctgccagcgtgccctggctgtg cagctcaacacctacttcagacagttccctgaacatttgctctgtaagagagatcctgaa aatcttccagtgaagcctgcagaggggctggacgaggatgacctggccagttctgagcac agcatggagctgctgtcgctgcccttccgcacagacaggtcctggaaggcacacctctcc tctctgtgggacagggtgaggagaagaagaacacaaggctctccagatttggtgaccgac ttgaatttgccctggtatcagttttttacccatctggaagatcacgatcctgaagtttgt gaggatccagagaggatggtggcctttgtcccccgggctgtcacccgggcagcttcccca gcgctccaaaggcaggctgcagccccgggggcagcagcacagcagtgggcacagatcccc gtgggagcaggccaggaaatggtgaaactggagtgcaagctggtgactggagccaaggcc gtgtttgtgctgcaggcacaggacacggggctgtccctggcgctctgggattttgagtcc caggacgtgacgtgttcccactttggcaggagcagtgtctatgtggagtgcagtgcagag gtgccactgtgtctgctgctgacagagcgtggtctgtccctggtgctgtttggggtgact cgggaggagttcctgagcaggctgctgacgtttggcagcgccggggtggtggattccgtg tgtcacctcaatggctgggagaggtgctccatccccatccacgccctcgaggcaggtttg gagaatcgccagctggacacggtggacttgtttttgaaaagcaaagaaagtgttctcagt ctgtctgcagcctgccctgggcctgagcagcctgggggtgctgcctcccagtcctacctg acaaatttggaggagctcaggccagctctaaacttgctctgctcagcaatccgggacaat gatctggagcctcacagcaaacacttctctgagcagctcctgaacctcaccctgactttc ctcaccaagcagctggaggaaatctttgtgcacacagaggaacctgatgagttcctgcag aaggctgcagatattttaactgattacatcattaaactgaggaaattcctgaggaaatac cctcacccagtgatggccccagggcacacgggagctgagctggatgaagacctgcctgag atagaagagagcaaagagtgggaaaaactgacaccagaggaagtcattgctgatgccatc ctcagcaacaaaatcccagaggcccagatgttcttccggaggcagcagcatcctgccgag agcctgcaggagctgatccagacgggtctgagcctggtctacgcccgcctgctgaagggc agccccagggaggcctcggagctgctgaggaacatgggcctggacgtgaagcaggagctg cacaagatctgcctccacacgcaggacaggcacgtcagggagctcctggtgaaagtctta caagaagaaaattatttttctgaagaagagaagaaaattattgactttgtgcatcaagtt gaaagcttgtactcagaatccttccaggaaaatgaagacactctgtctctttccaggggc tcgcagctgggctggggcagccccgccgccccccggctcaccctgaccctcagctgggct ctgtgctgggaccagctgctgcaggagctgcttctgctgccccggagagcacgacaagaa ctcaagagctgcagtcctgaggtgctctggatgcacctgacagcccagcacgactggctg agtgtttgctcctggattgaggagtcagagcccagccaggctccacgagacccggctgcc tggccccccctgagccctgacatcgtggacaggagcactctgtgcagcccctacatgaga caggacatcctcaacaagctggccagaaagggaatttttgtccgttctgagctggaagat tttgagctgctgctccagaggttgtcgtgcctggggggagtcctgcagaatcctcaccct gttccaaaatacagcactgccagtggcctggacttccacgctcagtttgtcctgcactgc ctgcagcacagcctgcagtacctgctgtacacttacctggactattacagtttgacccct tcaaactgccctgtcctggataacaaggagctgcaggaagcacatccctggtttgagttc ctggtgcagtgccggggggttgccagcaatccccgagatcccaagatgattttccaggcg agtctggccaatgctcagatgctgattcccagcagccaggggggtgtgaacagcatcctg ctggagggcaggaccctgctggccctggccaccacggtctatgggcctgggggcatcgac caggtccttcagaacgaagatgcagaaaaacctctgaagaaagttgatccacagctgtta aaaatggccttgggcccttaccccaagctcaaggctgctctctttccctcctgcactgct catggaattctgcctcctgacatctctctctaccaccttctgcagtcattaatgcccttt gatcccaggaaattatttggctggcagtcaacaaacactcttgctgcgtcagatgcctgg agcgagctgccccacttctccagcccccagctgctgagcaggcacgccgtgctggagagc ttggacttcctcttctacctgctgcagggccgccctgccttcgccttcggcaccttcctg gggcagcagctggcccggagcaaagcccccaggcagctgatccagcgggcagcacgggag gcacggctgctggctctctgctccttcggcgtgcccggggtggctgcagcctgcgtgtgc ttcctggagctgctggggcaggacagcctggggctgcgcgtggggctgcgcgccgccagc ctcatcgcccgccacggcccctccagggactccctggttgagaagttaacaaagttggct gatggtgaaaaagcagcagcagcagcacttctgacctccttggaggaggccttctgggat gccattgagcagcaaggaataaagaggacatccagtgactccagaaggcagtggtccttg gtcatgcagttctgcaaactccataacctggagctgagcacgtccttcctgagggaatgt gccaaatccaacgagtggctgcagttcctcatccagagccagctccacggccaccagcca gcccaggtgctgcccctgctgcaggagttccccgccgtgctgcgggaccacctggagctg gccctggggaagctgctggggcccggagccgcgggcggtgcccgaggagccgcgggcagt gcccgaggagccgcgggcagtgcccgagccgggagcgtgttccgggtgctgctgcggtgc caggagcagcccagcccctgctgctgcctgctggccgaggggctgcgggcccaggcgccc atcctcagcgtgctggcagcctgctgccccggtgccaacctcatctcctgcctctgcgtt tggatcctcacctccgtggatgatgccaccagggctgaggccaccgcccacacccagggc tgggcagagggggcccggtgggacctgcaggacctcgctgccatctggaaagtcttcttg aggaagcagaagagtaaaacgcttctgaatggcttccggctctttttaaaggactcccct ttgctgcacatcctggagatgtacgagctgtgcatgaactgtaaaaagtacaacgaagct aaaaccaaactggacaaatttcaggaaagcctcacaaaccccggggccgcagggggagcg gcccccgcgctgccgctgccctggctgcgctcgcaggcgctgttcctcctggagctgatg ctgcagcagtgccacaccgactacgagctgggcaagctcctgcagctctttgctgcagca gagaccccgctgctggacggcccccacctgaagaggctctgtgccctcagcgaggccctg agggactcctccatctccatcagccgctccatcctgagctcctgcagcctggaggcgttc cagggggagtgcagctccattctggagcagctgcaggagagagggatgttcagcctggct cgggaggtggcggccctggctgagctgcccgtggacggcgtggtcacacacgaggttctg agggatctccatcatttaagagacactggacagtggcatcaaacccagacaagagccgag ttctggaagaagtgcaacgacaccttcactaaacatggcatccgcagccgcgccgccgcg gagttcttcctccgccaggccaacggcgcgagggagtcctgggggcaggaggagagagct gccctggtggagagggagctgctgctgaccctggcggggcactggctggccaaggagccc gggctgcccgtgcaggagctggaggagctggagaagcagatctggctgtgccgcgtggcc gagcgcgcgctgccggccgaggccgcggggccgtgccccggcaccgcgaccctcgccagc ctggcacggcgcttctccttcgccgggctgccggccctgaccgcggccgggtgccacggg ctgagcgccccggcccgcggggagccccgggtggcgccgggcaccgaggagctgggcacc gaggagcagccccagctgggcaccgaggagcagccccagctgggcacagcagcaccaggc accgaggagcagccccagctgggcctgggcacagcagcaccgggcaccgaggagcagccc cagctgggccccgcggagcgggcggcgctggccgcgctgctgggcgccctgctggaccag ggcagcgtgcaggaggccgcccgcgtgtgccgctacttccagctgtggcaccgggacgtg gcgctggcactgcgctgccgagccctggcgctgggcgaggcccggcccgagcccgaggtg ccggccccgctgacggacacggccggcacagccccgggcacatccagcctggaggactgg acccctctgggatgtggggacgatgccgtagtggcggcgctgaaggccctggcagaggaa tgtgtccacggcaggggctactgcaggcaggtcctgtgcctctacgagctctccaaggtg agcccaggcccttgtccagccctgctggcgctggggagggcaggtgaggggaggaagagc ttggcaggtgccctcaaggagctgcagagggtggaattccagccctttgtgtgggaaaag gccagaagcttcctgggcatgagtgctgaggtgagcttgggcacagctggagttcggctc caggtgctgtcccaccctccgggctgctctcctcacttccatgcttgcactttttgngcc cccgcgctgccgctgccctggctgcgctcgcaggcgctgttcctcctggagctgatgctg cagcagtgccacaccgactacgagctgggcaagctcctgcagctctttgctgcagcagag accccgctgctggacggcccccacctgaagaggctctgtgccctcagcgaggccctgagg gactcctccatctccatcagccgctccatcctgagctcctgcagcctggaggcgttccag ggggagtgcagctccattctggagcagctgcaggagagagggatgttcagcctggctcgg gaggtggcggccctggctgagctgcccgtggacggcgtggtcacacacgaggttctgagg gatctccatcatttaagagacactggacagtggcatcaaacccagacaagagccgagttc tggaagaagtgcaacgacaccttcactaaacatggcatccgcagccgcgccgccgcggag ttcttcctccgccaggccaacggcgcgagggagtcctgggggcaggaggagagagctgcc ctggtggagagggagctgctgctgaccctggcggggcactggctggccaaggagcccggg ctgcccgtgcaggagctggaggagctggagaagcagatctggctgtgccgcgtggccgag cgcgcgctgccggccgaggccgcggggccgtgccccggcaccgcgaccctcgccagcctg gcacggcgcttctccttcgccgggctgccggccctgaccgcggccgggtgccacgggctg agcgccccggcccgcggggagccccgggtggcgccgggcaccgaggagctgggcaccgag gagcagccccagctggcactgggcacagcagcaccgggcaccgaggagcagccccagctg ggccccgcggagcgggcggcgctggccgcgctgctgggcgccctgctggaccagggcagc gtgcaggaggccgcccgcgtgtgccgctacttccagctgtggcaccgggacgtggcgctg gcactgcgctgccgagccctggcgctgggcgaggcccggcccgagcccgaggtgccggcc ccgctgacggacacggccggcacagccccgggcacatccagcctggaggactggacccct ctgggatgtggggacgatgccgtagtggcggcgctgaaggccctggcagaggaatgtgtc cacggcaggggctactgcaggcaggtcctgtgcctctacgagctctccaaggacctgggc tgctccttcgcggagctggcggcgcgggagccgcgggaggtgctggccgccatcctggcg cggcgggggccggggcgcggccgcagggcccaggccttcatcgcctgccaggggctgccc ccggccaccgtggccccgctgctggcactgcaggtcacccaggagctgctggcatcggcc cagggcaaagggcagaagcaggtttggaaccctgcagtggagagccaggagctcctggag cttgccaagctgtgccaggatcacaccttggttgggatgcagttactggataaaatctcc tctgtcccccgtggggagctgtcatgcattacagagctgctgatcctggcccacagctgc ttcagcctgacgtgccacatggaggggatcacacgcgtgctgcaggcagctcggctgctc accgaggagcacctggctcccagggaggagtacgggctggtggtgcgcctgctgacgggc attggcaggtacaacgagatgacctacatcttcgatctgctgcaccagaaacattacttc gaggtgctcatgaggaagaaactggacccgggcgggacgctgaaggcggcgctgctggac tacaccaagcgctgccggcccggcgacagcgagaagcacaacatgatcgcgctgtgcttc agcatgtgcagggagatcggccagaaccacgaggctgccgcctgcacccagctcaaactc atcgagtgccagccctggggcactgcagggctctgggctctcagggatgctcccaggttt ccctggaagctctcagctgctctgttgcaggactcgtgcgtgcggcaggcgctgcgctgc cgccgcctgacgcggctcatcacactccagctgcacttcctgggctcagggcagagcacc aggatcatcaacctgggcaggcaggacctgccaggggccatcctggccttgcccaggttc taccaggcagccatcgtggccgaggcctacgagttcctgccggactgggccgaggttctg ttccagcaggtgatcaccaggggtgacttcgtgtacctggaggagttcaggcagcagcgg ccgctgcagcccggcctgttcgaggaggtggccaagaaggtcaaacagcagcccccggct gatgctgccctgaggaacctgaagcggttcctcacccactgtgaggacatctacacctac tacaggctggcctacgagcacaagttctatgacgtggtgaactccctgctgaaggaccct cagactggctgctgcctcaacgacctcttatccacctga

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