Lonchura striata (white-rumped munia): 110477629
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Entry
110477629 CDS
T05897
Symbol
RXRA
Name
(RefSeq) retinoic acid receptor RXR-alpha isoform X1
KO
K08524
retinoid X receptor alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03320
PPAR signaling pathway
lsr04148
Efferocytosis
lsr04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110477629 (RXRA)
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
110477629 (RXRA)
03320 PPAR signaling pathway
110477629 (RXRA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110477629 (RXRA)
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
lsr03310
]
110477629 (RXRA)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
110477629 (RXRA)
Nuclear receptors [BR:
lsr03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
110477629 (RXRA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nuc_recep-AF1
zf-C4
Hormone_recep
tRNA_bind_3
Motif
Other DBs
NCBI-GeneID:
110477629
NCBI-ProteinID:
XP_021399254
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Position
17:8238566..8336523
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AA seq
477 aa
AA seq
DB search
MDTKHFLPLDFSNQVNSTSLNSPTSRGPMATPSLHPSIGPGIGSSLGSPGQLHSPISTLS
SPINGMGPPFSVISSPMGPHSMSVPSTPSLGFGTSSPQLNSPMNSVTSTEDIKPPLGLNG
VLKVPAHPSGTMASFTKHICAICGDRSSGKHYGVYSCEGCKGFFKRTVRKDLTYTCRDNK
DCLIDKRQRNRCQYCRYQKCLAMGMKREAVQEERQRGKDRNENEVESTSSANEDMPVEKI
LEAELAVEPKTETYIEANMGLTPSSPNDPVTNICQAADKQLFTLVEWAKRIPHFSELPLD
DQVILLRAGWNELLIASFSHRSIAVKDGILLATGLHVHRNSAHSAGVGAIFDRWAGMEGW
APVHHRARTPPALAAPQTASLPAGGVHPMKKPLLSNLPTNQRPQTGRRLPSANQSPFHGL
QMPSNVTRRPLLCSFSSLIGPSRDLICCGNPGLPSGCPGTLAGVRNPLGQSPQRHWL
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacaccaaacacttcctgccgctggatttctccaaccaagtgaattccacatccctg
aactcccccacgagccgggggcccatggccaccccgtccttgcacccgtccatcgggccg
ggcatcggctcctcgctgggctcgccgggccagctgcactcgcccatcagcaccctgagc
tcgcccatcaatggcatgggccccccgttctccgtcatcagctcccccatgggcccacac
tcgatgtctgtcccctccacgcccagcctgggattcggcaccagcagcccacagctcaac
tcgcccatgaactccgtcaccagcacagaagacatcaagccacccctggggctcaatgga
gtcctcaaagtgccagcacacccctcaggaacgatggcctccttcaccaagcacatatgt
gccatctgcggggacagatcttcgggtaaacattacggggtttacagctgtgagggctgc
aaaggcttcttcaagcgcacggtgcggaaggacctgacctacacgtgccgggacaacaag
gactgcctgatcgacaagcgccagcgcaaccgctgccagtactgccgctaccagaagtgt
ctggccatgggcatgaagagagaagccgtgcaggaggagaggcagcgggggaaggaccgc
aacgagaacgaggtggagtccacgagcagcgccaacgaggacatgcccgtggagaagatc
ctggaggctgagctcgccgtggagccaaagacagagacctacatcgaggcaaacatgggc
ctgacccccagctcgcccaatgacccggtgacaaacatctgccaggcagcagacaaacag
ctcttcaccctggtggagtgggccaagaggatcccccacttctccgagctgcccctggat
gaccaggtcatcttgctcagagcagggtggaacgagctcctaattgcctccttctcccac
cgctccatagccgtgaaggacgggatcctgctggccacggggctgcacgtgcaccggaac
agcgcccacagcgccggcgtcggggccatcttcgacaggtgggcagggatggagggctgg
gctcctgtccaccaccgtgcccggacacccccagccctggctgcaccccaaactgcctcc
ctccctgctgggggggtccatcccatgaaaaaacccctcctctcaaacctaccgacaaac
caacggccccaaacagggaggaggctgcccagtgcaaatcaaagcccctttcatgggctc
cagatgccttctaacgttacgaggaggccactcctttgttccttttcatctttaattgga
ccaagccgtgatttgatttgctgtgggaatccagggcttccctctggctgccctgggacc
ctggcaggggtcaggaacccccttggacagagcccccagagacactggctgtga
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