Lonchura striata (white-rumped munia): 110477642
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Entry
110477642 CDS
T05897
Symbol
SNAPC4
Name
(RefSeq) snRNA-activating protein complex subunit 4
KO
K09453
snRNA-activating protein complex subunit 4
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
lsr03000
]
110477642 (SNAPC4)
03021 Transcription machinery [BR:
lsr03021
]
110477642 (SNAPC4)
Transcription factors [BR:
lsr03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters Myb, Myb-like factors
110477642 (SNAPC4)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase III system
Other transcription-related factors
snRNA-activating protein complex (SNAPc)
110477642 (SNAPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myb_DNA-binding
Myb_DNA-bind_6
HTH_Hrp3
SLIDE
Motif
Other DBs
NCBI-GeneID:
110477642
NCBI-ProteinID:
XP_021399281
UniProt:
A0A218V5I1
LinkDB
All DBs
Position
17:8964427..8978148
Genome browser
AA seq
1540 aa
AA seq
DB search
MSRGPGPLRSPRGLDLDAERERIRREIQQLERSLQPGGTDLQLSDCTLSSDGGDEDDDDE
DSYAEMEVEVEGGDSSDDDDDDDDDIESLPQDPETCLQMNHVYQDVIKEKIEEVELLVAQ
NREQQKEIICELHGPKRAKAGDGRNLQTNVFLGHFMKPYFKDKITGIGPPSNEDAKEKAA
QGIKSFEQLHSTKWKTEEKTLLQKSVVSDRLQRLLQPKLLKLSYWNQKLEKIKTDIEKET
LEKQIKDLEQEIEAINQLPESDLIGNRFDEHDWDKISNIHFDGQRRSEELRKFWQNWEHP
SINKNEWTEEELERLKQIAAEHNYLDWQAIAQELGTNRTPFQCLQKYQLCNKDLKKKEWT
KEEDQMLLELVQEMRVGSHIPYKKIAYYMEGRDSAQLIYRWTKSVDPSLRKGPWTPEEDA
MLMAAVSKYGEKDWYKIRTEVPGRSDAQCRDRYLKALHWDVKKGKWSLQEEEQLIELVQK
HGLGHWSKIASELPHRTNAQCQSKWKFMIGSKKRSGATKRRHAEESSSPSESSSEELELA
DSSEEEVTSTTRKEEFAIPSIDLWIPTGVDVEGTTRERHQIQSLLSAARAGAGSSCCDVA
GVECDGDGAADNSSELSTLLRGIANAHSTDVLVKNPAEVMAKASQCGKHLLQVGLEEVRA
ILKKNTSFQRKLMLRPPVSLSAKPPGGAAAAGQDVQGLQELPRRARRPSREHWRRLSLDR
KLLMAVTPWVGNVLLPCTLQAGRMAFHQTKAAAIHEKVQSVSLTSTPLFALLIQLFQIDT
KGCMKIIKERQLELLKASSRSPQQASQNTETSSGNSSHSQRNSQQGIPKRSARRSAPRAR
ASPTGALESCAPAVQGAPPAQRQKPKTVSELLQEKRLRESQAKAAMQRTVLVAPQVLVSG
PLIIQQPPQQIIPSAQAGSTAAAAAGTDSQVQGSPVPTRTSAAGSASAPVPENHSSAVPE
TGESPGCSQGAHLQSSKELKKKVLESSPEGGVSAGVSPAAAEKAPDQGGCNGQVTASSSA
SAVLQSQAFVPHQITVMALGTNKLSLSTPVTCELKSNGPQPRPVGLLPALVTPQAASPVI
PNSILPFKWVVTPQGLLCSAVQTVVGVPQGMPAAAGGTQGQTAVTSSANVSALGRTPVPA
KANPPHPSSAKTKGPSSQLAGVPLGKAADQSTDLLPVPSVSPGCTTTSSVSAVTPTCSDG
SCTAPDSSAAPAAPPAASPALSAVVLPQAQPPASSQGSDSQPVPSLSSSGRSNGSITTKG
SSCNPGSIRRVVVLCPGAAAPHSNAPGSSACSGAQALRNRPIASKPPSADVPPQPSTSCA
ENLLDFSLISLEDQGLVKEWMSGKQGVQVPPLQTRLPYLPPFLCSIKTLSKLLLQKTALE
EQAASLLPSEAGGDGGTGDVFHAIGELVQQKLGDNPAYLMLKARFLAAFTLPAVLATLPP
PKVTTTLSAIGKQLEESDDEEWQSEKKLFEEESCGNELTGVREHWRLGDEPGDKDAGLLN
QGMGAEEGPAWSAWGSCTDVADARAPQSRRSARFRKRRRI
NT seq
4623 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgcgggccgggcccgctccgctccccgcggggcctggacctggacgcggagcgg
gagcggatccgccgcgagatccagcagctggagcgcagcctgcagcccggcggcaccgac
ctccagctgtccgactgcaccctcagctccgatggtggtgatgaagatgatgatgatgaa
gattcttatgctgaaatggaagtggaagtggaaggaggagacagcagtgatgatgatgat
gatgatgatgatgatattgaaagcctgccccaggatccagaaacctgcctgcagatgaac
catgtgtaccaggatgttatcaaggaaaagattgaggaggtggagctgcttgttgcacaa
aacagagagcagcagaaggaaatcatatgtgagcttcatggtccaaaaagagccaaggca
ggagatggcagaaatctacaaacaaatgtgtttttgggtcattttatgaagccatacttt
aaggataaaataacaggaattggccctccttccaatgaagatgccaaggaaaaggcagct
cagggcataaaatcctttgaacagctgcattcaaccaagtggaaaactgaagagaagaca
ctgctgcagaaatccgtggtgagcgaccgcctgcagcgcctgctccagccaaagctgctc
aagttgagttattggaatcagaaactggagaaaatcaagactgacatagaaaaagagacc
ttggaaaagcaaatcaaagacttggagcaagaaatagaagcaattaaccaactcccagaa
agtgacttaataggaaacagatttgatgagcacgactgggacaaaatttccaacatccat
tttgatggccaacgtcgctcagaagaattgaggaagttttggcaaaattgggagcatcca
agcatcaacaaaaacgaatggactgaggaggaactggagaggctgaagcagatagctgct
gaacacaactacctggactggcaggccattgcccaggagctggggacaaacaggacacct
ttccagtgcttgcagaaataccaactctgtaacaaagacttaaaaaagaaagaatggacc
aaggaagaggatcagatgcttttagagcttgttcaagagatgagagtgggaagccatatc
ccatacaagaaaattgcttattacatggaaggaagagactctgctcagctgatttaccgc
tggacaaagagtgtggaccccagcttgaggaagggaccctggacaccagaggaagatgct
atgctgatggctgcagttagcaagtacggggagaaggactggtacaaaatccggacagaa
gtgccaggcaggagcgacgcccagtgccgggaccggtatttaaaagcattgcactgggat
gtaaagaaaggcaagtggagcttgcaggaagaggagcagctgattgaactggttcaaaag
catggcctgggtcactggagtaaaatagcttcagagctgccacatcggactaatgcccaa
tgccagagcaagtggaaattcatgattggctctaagaaaagatctggggcaaccaaacgg
cgccatgctgaggagagctccagcccttctgagagcagcagtgaggagctggagctggca
gacagctcagaggaggaggtgaccagcaccacgagaaaggaggagtttgcaatccccagc
attgacctgtggataccaacaggggtggacgtggaggggacaaccagagagagacaccaa
atccaatccctcctctctgctgccagggctggcgcagggagcagctgctgtgatgttgca
ggggtagagtgtgatggagatggagctgctgataactcatctgagctgagcaccctgctg
aggggcattgcaaacgcccattccacagatgtgctggtgaagaatccagcagaagtgatg
gccaaggcttcccagtgtggaaaacacttgctgcaggttggcctggaggaagtgagagca
atattaaagaagaacacgagctttcagaggaaactgatgctaagacctcctgtcagcctt
tcagccaagccccctggcggggctgcagctgctggccaggatgtgcaggggctgcaggag
ctgcccaggagagctcggcgccccagcagggagcactggaggcggctgagcctggacagg
aagctgctgatggcagtgaccccttgggtgggcaatgtgctgctgccctgcactttgcag
gctgggaggatggctttccaccagacaaaagctgctgctattcacgagaaggttcagtca
gtcagtctcaccagcactcccctgtttgcactgctcattcagctcttccagattgatact
aaaggctgtatgaagattatcaaggagaggcagttggagctgcttaaggctagttcaagg
agccctcagcaggcttcccaaaatacagagacttcttcaggcaactcatcccattctcag
aggaattcccagcagggcatcccaaagaggtctgccaggagatctgccccaagagcacgg
gccagccccactggtgccttggagagctgtgccccagctgtgcagggagctcccccagcc
caaaggcagaagccaaaaactgtctcagaattgctgcaagagaaacgtttgagggagtcc
caggccaaggcagccatgcagaggacagtgctggttgccccacaggtgctggtttcaggg
cctttgataatccagcagccaccacagcaaatcattccctctgcacaagcagggagcaca
gctgcagcagctgctgggacagatagccaagtacagggttcaccagtgcccacaaggact
tctgctgcaggttctgcttctgctcctgtgcctgaaaaccactcctcagcagtgccagaa
actggggagagccctggctgctcacaaggggcacatctacagtcaagtaaggaactaaaa
aagaaagttctggaaagcagccctgaaggaggggtttctgcaggtgtgagtccagctgca
gcagagaaggcccctgaccagggagggtgcaatggtcaggtcacagccagtagctcagct
tcagcagtgttgcaaagccaggcttttgtgcctcaccagatcacagtgatggctcttggc
accaataaattgtccctttccacaccagtcacctgtgagctgaagagtaatgggccacag
ccgaggccagtcgggctgctgcctgctcttgtcactccacaagctgcttctcctgtgatt
cccaacagcatcctgcctttcaagtgggttgtaaccccccagggtctgctctgcagtgct
gtgcagactgtggtgggtgttccccagggaatgccagctgctgctgggggaactcagggt
cagacagctgtgacttccagtgccaatgtttctgctttgggaaggactcctgtaccagct
aaagcaaatccacctcaccccagcagtgcaaagacaaaaggaccaagttcccagctggca
ggagttcctttgggaaaggcagctgaccagtccacagatctcttacctgtgccctcagtg
agtcctggatgcaccaccacatccagtgtttctgctgtaacccctacatgttcagatggc
tcctgcacggctccagactcctctgcagctccagctgcccctccagctgccagcccagcc
ctgagtgccgtggtgctgccccaagcacaaccccctgccagctctcagggctctgattcc
cagcctgtgcccagtctcagcagctcgggaaggagcaatggctccatcacaacaaaggga
tcatcctgcaatccaggcagcatcaggagagtggttgtgctgtgtccaggagctgcagct
cctcacagcaatgccccagggagctctgcctgctctggtgcccaggcactgaggaacaga
cccattgcctccaaaccaccgagtgctgacgtccctccccagccaagcacctcctgtgca
gagaatctccttgacttcagcctgatctccctggaggaccaggggctggtgaaggagtgg
atgagtgggaaacaaggggttcaggtgccaccactgcagaccaggctgccttatctgcca
cctttcctctgcagcataaaaaccctctcaaagctccttctgcagaaaacagctctggag
gagcaagcagcctctctcctgccctctgaggccggtggggatgggggcactggggatgtt
ttccacgccattggagaactggtgcagcagaaactgggtgataaccctgcttacctcatg
ctgaaagccagattcctggcggccttcacactcccagctgtcctggcaactctgcctcct
cccaaagtgacaacaactctgtcagccatcgggaagcaacttgaggagagtgatgacgag
gagtggcagagtgagaaaaaactgtttgaggaagagagttgtgggaatgaattaacagga
gtacgggagcactggagacttggggatgagcctggagacaaagatgctggtttactaaat
cagggcatgggggctgaagagggccctgcttggtctgcctggggctcctgcactgatgtg
gctgatgccagagctccccaaagcaggagaagtgcccgcttcaggaagaggaggaggata
tga
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