Lonchura striata (white-rumped munia): 110477699 Help Entry 110477699         CDS       T05897                                  Symbol SETX Name (RefSeq) probable helicase senataxin   KO K10706   ATP-dependent RNA/DNA helicase, senataxin [EC:5.6.2.5 5.6.2.3] Organism lsr  Lonchura striata (white-rumped munia) Brite KEGG Orthology (KO) [BR:lsr00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:lsr03021]     110477699 (SETX) Enzymes [BR:lsr01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.3  DNA 5'-3' helicase      110477699 (SETX)     5.6.2.5  RNA 5'-3' helicase      110477699 (SETX) Transcription machinery [BR:lsr03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      110477699 (SETX) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  AAA_11 AAA_12 AAA_19 AAA_30 UvrD-helicase AAA_22 Viral_helicase1 SLFN-g3_helicase AAA_16 DUF4164 Motif Other DBs NCBI-GeneID:  110477699 NCBI-ProteinID:  XP_031362146 LinkDB All DBs Position 17:complement(7329541..7358365) Genome browser AA seq 2790 aa AA seqDB search MSTCRWCTQSGADTTDFLKHYAAQGLSQEDFKGSNDDLCYCLECVVEYHKAREACPGLHE DLWDLETSRLIAHMEKSMNEETGEDELFLVDEHGETPLSGYVGPNFENNLRVPILEILKY PYLLLHEKVSELCVEVLCRMELSQDSFQVFEKYPGIYLFLVHPNEVIRRWAILTARNLGK VDRDDYYDLEEVLTCLFRVIELGLFENPDIYSSSMFEKGKLILLPAHLYDTANYKNYWLG ICMLLSVLEEQAMDSLLLGPDKQNDFMQSILHTMEKEAADDSTDPFWPALHCFMVILDQL GSKVWGQLIDPVQAFQTIINSVSYNNEIKNIRSSFKRTKAEPESDYGDDMISCSQIVYNY NTEKPQKDTGWKAAICPEYCPNMYEDMQTLANMLQSDIGRDMRVHHGTFLWFIPFVQSLM DLKDLGVAYIVEVIHYLCSEIKDILIERFQECDKISEFFLLILVSIVELHRSKKCLHLLW ISSQEWVEAVVKCATLPSRAFTRCSEKAPGLLAKSSAAGSFQASNSVQHACVQLIRSLLK EGCQINQHTLCKQYLDKLNLLLRGNRAVGWQLSSQETQELQTCLKQVIRSIKGKVLSTSL AGGSSSNSTALSTVSMKHEKNACDDGYKTSGHERRDLYSPFVMSKEGRDCQENLSHRRKN AWEEECGDACRSSTSCTSTDSLLMHIKKEPNNLTAQNFLATKVCGKIQENRSSDLVAGKC NTDDQCFSSNTEHSGFRVKQKAESKTPLYLSAQTHLDSLSSRSCKSMQETSANSVFQSRL VPTKQVSKEASLDSSNSSRNEFGVQAKEADSTLLLGCDDTSLKKVSTEEKAGSSLLSFFK RTTNVQTSNQEQPNSNDLDKSDCKNLFSETFCRDEISGYGYFPFSSENKRDMIRPLSVKC EASDRLFEFSEYFRRENSSVGKKEENFVKTVSEDDDLSDSQVDRELSRLSLAAYAKSVNF PVTSNQESSLYHSVSDIKRKVRGSIRSSNEGQSIKCPNGGDHPSNQVIVISDSSDEEKSV AEKEETKNKNENTCAEPSLTSSSTSDSDTKKNSNSPGSHMLLDDCDSQYFEFETEAEVYS AWQDTQAYAVETTQEYKQDRVSPAPQTSYSDDCLNNDLNDWGYDVQYFSDDTMEEAASSI EKQTEDASCQKEADDAKEVTSSTLEESTGKEGAKGQLEKCADKDTAKGFTLDSKLPEPTA STSPISLASKLALKKNSTSPQKTMAKCKSAPAVQRSPKKHPVVKTAKNKTPLQGTTECSQ PGRSLPAVVPPKKVRQSPAPTSTAEKLGLKKGPRKAFDLSQPSLESLAKLRSHGKAAGRI GVTQKKRTKQIEAQRLSVKHNKKLLACQDRQYLRAKRSVKNSAGSSGIRNKVAKKCAKPV EQKPQSFEVGVIKESVENQRERKREETACPSASERKFESLSVEEVANASKMPCSSDWNSK WESNSVVVPPVPMDSSLSSTAIEDYKDESSGKGCTVLPECEMRTSKQNGCKSDESSDEGD DNLFLTQLDPVDMELCSQEESFQDAAIDSKTPEEMDVDESLQQNELSAVVKCKDKDCMEQ VEKSGEYCSKHPTTSPGTDHVFAKPSLPPKIKKPSTTKIFSTASSSRNAAFSKDLEDVRK LPPPSRSKVDAAKQVVVRPPLYPKPAPSGNPTCRPSSFSNLPQPLSSNNVLQSQNKHYDN ASNISRRPGRETYSSFLGTQQRDYSIFVNQVLKWTYEMFANFIYFGTPNDLLHTIVASVP VKFQGYNEYFNTFFPLMMLNAFETLAQEWVENQKVREKGYCFYLENFSADMNTAHFTAHL RESDLARQLHPKEDDLILLKVHKEKDTFGEESGMEYHTVNHVGLVTRFSRASGCANRQKE QQTACHLTVQTRGNLSFFIHKQVKCVVVGSLVTTHRKFKALLLLSRSPLARPIINPSYND FCPRDLCVASGSVVSYKNEYNEDQKRAIETAYAMVKQHPGLPKICLIHGPPGTGKSKTIV GLLSRVLRENTRSEKTAREKNSKIKPNRFLVCAPSNAAVDELMKKIIIAFKEKCQNKQEP LGNCGDIKLVRLGAEKSINNEVRGFSLDKQVEHRMKRKPGDCDQDIQKKKEALDQKLDML SRERAMHRCEKRESQMLNDEIGRLAKERQQLASQLKEVRVHTQKVQADIILESDIICCTL STSGWSLLESAFSRQGLDPFSCVIVDEAGQSCEVETLIPLIHRCNKLVLVGDPKQLPPTV KSIKAQQYGYDQSLMARLQRHLEEQVQQNMLHSLPVVQLTVQYRMHPDICLFPSNYVYGR TLKTAKAIEENRCSSEWPFQPYLIFDVADGREERDNDSYSNPQEVKLVMELVRTIKEKRK DLGLRRIGIITPYSAQKKKIQEQLDSVFKNNSPGEVDTVDAFQGREKDCIIVSCVRANSS EGSTLPYVQANSTKGSIGFLSSLQRLNVTITRARYSLFILGRLQTLMEDKNWNHLIQDAQ KRGAIIRTTEKNYKKEALRILKLRPPVQAPAKGGMMTSPVVQAGSSSGKRSEPGNSGNSP QELAAGPGHAVPQGSRGPSQPAGTPAADSNRGSAPAPSGAPAADSRRGSAPASVGAAAAD SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAADSRRGSAPA PSGAAALGAVPEKPRDPRLASLASRTEAKGKEQPLKGSHRSAQSNPGSTAQQGLAVCSAA RDQVCRTENAKKAQQTAGQCNVLPPAPHTAQHEGDRRAAVSKSSSRAPSKGGQSSSSEWS KDSRGLSRRPSQESPENTESSSAKRRKFFH NT seq 8373 nt NT seq  +upstreamnt  +downstreamnt atgagcacatgccgatggtgcacacagagtggtgctgacaccaccgacttcctgaagcac tatgctgctcaagggctgtcccaggaagattttaaaggatccaatgatgacctctgttac tgcctggagtgtgtggttgaatatcacaaagcaagggaagcatgtccaggattgcatgag gacttgtgggacttggaaacctcccgcctcattgcccacatggagaaatccatgaatgaa gaaacaggagaagatgagttatttctggttgatgagcatggggagacacctctgtctggt tatgtgggtccaaattttgagaacaacctgcgagtgcccattctggaaatactgaaatac ccatatctgctgctgcatgagaaagtcagtgagctgtgtgtagaagtgctttgcagaatg gaactaagtcaagactcctttcaggtctttgagaaatacccaggaatttatctctttttg gtacacccaaatgaggtgattcgtcgatgggccatcctaacagcaaggaatttaggaaag gttgacagggatgattactacgacttagaggaagtgctgacttgtttgttcagagttatt gagctggggctttttgagaacccagatatttacagctcttcaatgtttgaaaagggtaaa ctcatccttctgccagctcatttgtatgatacagccaactacaagaactattggctggga atttgcatgttgctgtcagtgctggaagagcaagctatggactctttgttactgggccca gacaagcaaaatgatttcatgcagtctatacttcacactatggagaaagaagcagctgat gattccactgaccccttctggcctgccttgcactgtttcatggttattttggatcagctt ggatctaaagtttggggtcagctgattgatcctgtccaagcctttcaaaccataatcaac agtgtcagctacaacaatgaaatcaaaaacattcgcagtagctttaagaggacaaaagct gaaccagagtcagactatggtgatgacatgatttcttgcagtcagattgtgtataattat aacacagaaaagcctcaaaaggacactggctggaaggctgccatttgcccagagtactgc cccaacatgtatgaagatatgcagaccctggctaacatgcttcagtctgacattggcaga gacatgcgtgtccatcacggcacattcctctggttcatcccttttgttcagtcccttatg gatctcaaggacctgggtgtagcctatatagtcgaggtcatccactacctctgctcagaa atcaaagatatcctcatcgaaagattccaggagtgcgacaaaatctcagagttcttcctc ctcatcttggtgtccattgtcgagctacacagaagtaagaagtgcctgcatttgctgtgg atcagctcccaggaatgggtggaggcagtggtgaagtgtgccacgctcccaagcagagcc ttcactcggtgcagcgagaaggcgccggggctgttagccaagagctcggctgcggggtcc ttccaggcctccaactcggtgcagcacgcctgcgtgcagctcatccgcagcctgctcaag gagggctgccagatcaaccagcacaccctgtgcaagcagtacctggacaaactcaacctc ctcctgcggggaaatcgagctgtggggtggcagctgagcagccaggaaacccaggagctg caaacgtgtttaaagcaagttataagaagtataaagggcaaagtactgagcacctctttg gctggagggagcagctcaaactcaacagctttgtcgactgtctctatgaagcatgagaag aatgcatgtgatgatggatacaagacgagtgggcatgagaggagggacctttattcacca tttgtcatgtcaaaggaaggcagagattgtcaagagaacctttcccataggagaaagaat gcctgggaagaggaatgtggagatgcatgtagaagttcaacatcttgcacatccacagac agcctcttgatgcatattaaaaaggagcctaataacttgacagctcagaactttttggca acaaaagtatgtgggaaaattcaggaaaataggagctctgatcttgtggcaggcaaatgc aatacagatgatcagtgcttcagttcaaatactgagcattcaggtttcagagtgaaacag aaagcagaatccaaaacaccactatatctgtctgctcagactcatcttgattctctgtct tcaaggagttgcaaaagtatgcaagagacaagtgcaaacagtgtgttccagtccagactg gtccccaccaaacaggtgtccaaggaagcatcactggattcctctaactcctctagaaat gaatttggtgtgcaagctaaggaagctgacagtactttgcttttagggtgtgatgacacc tcactgaaaaaagtatcaacagaagaaaaagcaggttcatcattgctgtctttctttaag aggaccactaatgtccaaacttcaaaccaggagcagcctaattcaaatgacttggataaa tctgactgcaaaaatctattttcggagaccttttgtagggatgagatttcagggtatggt tattttccatttagctctgaaaacaagagggatatgatcaggccactgtcagtgaagtgt gaagcaagtgacaggttgtttgagttttcagaatatttcaggagggaaaacagttcagtg ggaaagaaagaggagaattttgtgaagacggtttctgaagatgatgatttatcagactcc caggttgatagagagctcagtagattatctttagctgcttatgccaaaagtgttaatttt cccgtcacatccaaccaggaaagctcactgtaccacagtgtatctgatattaaaaggaaa gtgagaggttctataagatcttccaatgagggccaaagtatcaagtgtcccaatggtgga gatcaccctagcaatcaagtcattgtaatttcggactcttctgatgaagaaaaaagtgtg gctgagaaggaggaaacaaaaaacaagaatgaaaatacgtgtgcagagccatctttaact tccagcagcacttctgacagtgacactaaaaaaaactcaaactctccaggctctcacatg ttactggatgactgtgattctcagtactttgaatttgaaacagaagctgaagtttattcg gcttggcaagatactcaagcgtatgctgtggaaacaacacaggagtataaacaagatcgt gtttcaccagcacctcagacaagttattcagatgattgcctgaataatgacttaaatgac tggggctatgatgtgcagtactttagtgatgacaccatggaagaggcagcaagctcaata gaaaagcagacagaagatgcttcttgtcagaaagaagctgatgatgcaaaagaagtgaca agttcaaccttggaagaatcaactggcaaggaaggtgcaaaaggtcaactggagaaatgt gcagacaaagatactgctaaaggcttcaccctggactcaaaattgcctgaacccacagca tctacatctcccatctcattagcttcaaagttggcccttaagaaaaatagcacaagccca cagaagaccatggcaaagtgtaaatcagcacctgctgttcagagaagtcctaaaaaacat cctgttgttaaaacagccaaaaataaaacaccactccaaggcacaacagaatgttctcag cccggcaggtcactgcctgctgtggttcctccaaagaaggttcggcagagtcctgctcca acatccactgcagaaaagcttggcctaaagaagggcccccgcaaggcgttcgacttgtcc cagccctccctggagagcctggctaagctgcgcagccacggcaaagctgcaggcaggatt ggagttacacagaaaaagaggaccaaacagatcgaggctcagcgtttgtctgtaaaacat aataaaaaactgctggcctgccaggaccggcagtatctaagggccaaaagaagtgtgaaa aattctgcagggagttcggggattagaaacaaagtcgccaaaaagtgtgcaaaacctgtg gaacaaaagcctcaaagttttgaagtgggagttattaaagaatctgttgaaaaccaaagg gagagaaaaagagaagagactgcttgtccttctgccagtgagagaaaatttgagagtctc tctgtggaggaggtggcaaatgcctctaaaatgccttgttcttcagactggaacagcaag tgggagagtaacagtgttgtggttcctcctgtccctatggattcaagtctctcttccact gcaattgaagattataaagatgagtcttcaggaaaaggttgcactgtcctgcctgagtgt gagatgagaacttcaaagcaaaatgggtgtaaatcagatgaaagcagtgacgaaggtgat gataatctgtttttaacccagttagatcctgtagatatggagttatgttctcaggaggaa agttttcaagatgctgctatagatagtaagaccccagaggaaatggatgttgatgaaagc cttcagcagaatgagctctcagctgttgtgaaatgtaaggacaaagactgtatggaacag gtggaaaaatctggagagtactgcagtaaacacccaaccaccagcccagggacagatcac gtgtttgccaagccttctctcccacctaaaattaagaagccttccactaccaaaattttc agcacagcaagttcttcacggaatgcagccttcagcaaagatctcgaagatgtcagaaag ttgcccccaccttcaagaagcaaagtggacgcagccaaacaagtggtggtcaggcccccg ctgtatccaaaacctgcaccatcaggaaatccaacgtgcagaccttcaagtttcagtaat ttacctcaaccccttagttccaataatgttctccagtcacaaaataaacattatgacaat gcttcaaatatttccaggaggcctggccgagaaacctactcctcttttcttggcactcag cagcgcgattacagcatttttgttaaccaagtcctaaagtggacttacgaaatgtttgca aacttcatctactttggaactccaaatgatcttctgcacactatagtagcctctgttcct gtcaaatttcagggctacaatgagtattttaacacattttttcccttgatgatgctcaac gcctttgaaacactggcacaagaatgggtagaaaaccagaaagtaagagagaaaggttat tgcttctacttagagaacttttctgctgatatgaatacagcacattttacagctcatcta cgagagagtgatttggcgaggcagcttcatccaaaggaggatgacttaatccttttgaag gtccacaaggagaaggacacttttggggaagaaagtgggatggagtaccacacagtgaat catgttggccttgtgacacgtttttctcgtgcatctggctgtgcaaacagacaaaaagag cagcaaactgcctgtcatcttactgtgcaaacccgaggcaatttgtcattcttcatccat aagcaagtgaagtgtgtggtggttggctccctggtgaccacacacagaaagttcaaagct ctgctgctgctgagcaggagccccctggctagacccatcataaatccaagctacaatgat ttctgtcccagagacctgtgtgttgcctcaggaagtgttgtttcatataagaatgaatac aacgaagatcaaaagagagccattgagacagcttatgccatggtaaagcagcacccagga cttcccaagatctgccttatccatggaccacctgggacagggaaatcaaaaactattgta ggactcctgtcccgtgttttgagagaaaacactaggagtgagaaaacagctcgggaaaaa aattccaagattaagccaaaccgttttctagtttgtgcaccatcaaatgctgccgttgat gaactcatgaaaaagatcatcattgcatttaaggaaaaatgccaaaacaaacaggagcct ttgggaaattgtggtgatatcaaattagtgcgacttggtgctgaaaaatcaatcaacaat gaagtgcggggattcagcctggataagcaagttgaacacagaatgaaacgaaagccaggt gactgtgaccaggacattcagaagaagaaagaagctctggatcagaagctggacatgctc tctcgagagcgtgccatgcacagatgtgagaagagagagagtcaaatgttaaatgatgaa attggcagacttgcaaaggagagacaacaactcgcttctcagctaaaggaggttcgggtg cacacccagaaagtgcaggcagacatcatcctggagtctgacatcatctgctgcacgctg agcaccagcgggtggagcctgctggaatcggcgttctcccggcagggcctcgatcccttc agctgtgtcatcgtggatgaggcaggacagtcctgtgaggtggaaacactgattccactg atccatcgctgtaataaacttgtccttgttggagatcccaaacagctccctcccactgtc aaatctataaaagctcagcagtatggctatgaccagtctttgatggcccggctgcagagg cacctggaggagcaagtgcagcagaacatgctgcacagcctgcctgtggtgcagctgacc gtgcagtacaggatgcacccagacatctgcctcttcccatccaactatgtttatggcagg actctaaaaactgccaaggcaatagaggagaacagatgttcttcagaatggccattccag ccctacctcatttttgatgtagctgatggtcgtgaggagcgagacaatgattcttacagc aatcctcaggaagtgaagctggtgatggagttagttagaacaattaaggaaaaaaggaag gatctgggccttcgtcgcattggaataattaccccttacagtgcacagaaaaagaaaatt caggaacaactggacagtgtgtttaagaataacagcccaggagaagtggacacagtggat gcgttccagggccgagagaaggattgcatcatcgtgtcctgcgtgcgggcaaacagctcc gagggctccactctgccatatgtgcaggcaaacagcaccaaaggatccattgggtttctg tcgagcctccagcgactgaatgtcaccatcacccgagcccggtacagcctcttcatcctg ggccggctgcagacgctcatggaagataaaaactggaatcacttgattcaggatgctcag aaaagaggtgccattattaggacaacagaaaaaaattacaagaaagaggctctcaggatt ttgaagctcaggccaccagttcaggccccagccaaaggagggatgatgacatctcctgtg gtgcaggctggttcttccagtggcaagaggagtgagcctggaaattctggaaacagccca caggaacttgctgctggccctggccatgcagtgcctcaaggaagccgagggccctcacag cctgcagggactccagctgcagattccaacaggggcagtgctcctgcaccctcgggggct ccagctgcagattccaggaggggcagtgctcctgcatctgtgggggctgcagctgcagat tccagnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnncagctgcagattccaggaggggcagtgcccctgca ccctcgggggctgcagcacttggtgctgttcctgagaagccacgggacccaaggctggca agcctggccagtcgaactgaagccaaaggcaaggagcagcccttgaaaggcagccatcgg tcagcccagagcaatccaggatcaacagcacagcaaggcctggctgtgtgctcagctgcc agggatcaggtgtgcagaacagaaaacgccaagaaggcccagcaaacagcagggcagtgc aatgtgcttcccccagcccctcacactgctcagcacgagggtgacaggagagcagctgtg tccaaaagcagttccagagcccccagtaaaggaggtcagagcagcagcagtgagtggagc aaagactctcgtggtttgtcaaggagaccatcccaggaatcaccagagaacacagaatca agctctgccaagagaagaaagttctttcactga

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