KEGG   Lonchura striata (white-rumped munia): 110477880
Entry
110477880         CDS       T05897                                 
Symbol
KDM4B
Name
(RefSeq) lysine-specific demethylase 4B isoform X1
  KO
K06709  [histone H3]-trimethyl-L-lysine9/36 demethylase [EC:1.14.11.66 1.14.11.69]
Organism
lsr  Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lsr03036]
    110477880 (KDM4B)
Enzymes [BR:lsr01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.66  [histone H3]-trimethyl-L-lysine9 demethylase
     110477880 (KDM4B)
    1.14.11.69  [histone H3]-trimethyl-L-lysine36 demethylase
     110477880 (KDM4B)
Chromosome and associated proteins [BR:lsr03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    110477880 (KDM4B)
SSDB
Motif
Pfam: JmjC zf-HC5HC2H_2 Tudor_2 zf-HC5HC2H PHD_2 JmjN PHD SLX1_C DUF7141 Tudor_3 DUF4537
Other DBs
NCBI-GeneID: 110477880
NCBI-ProteinID: XP_031363042
UniProt: A0A218UCQ3
LinkDB
Position
28:complement(3954106..4031889)
AA seq 1090 aa
MGSENPSPQNPGCKIMTFRPSLEEFRDFGRFIAFMESQGAHRAGLAKVIPPKEWKPRRTY
DDIDDMVIPAPIQQVVTGQSGLFTQYNIQKKPMTVGEYRRLANSEKYCTPRHQDFEDLER
KYWKNLTFVSPIYGADISGSLYDADVDEWNIGNLNTLLDMVEHECGIIIEGVNTPYLYFG
MWKTTFAWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAKGFFPGSSQGCDAFLR
HKMTLISPSILKKYGIPFDRITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATLRWIDY
GKMATQCTCRKDMVKISMDVFVRVLQPERYELWKQGKDIAVLDHMKPTALSSPELDAWNE
TKAELKAKLLRRIGDEEEDNKHRSHRKRSQPRRHKTEDQKSLGDVMAIETALEDVKVKEE
LKRGPDLEEEERSKGMEGEAECKAKARPPKAKGERKKKQLFPPQPPVPPPGPIPAPQPPP
EAGPGAARPPGPPPAPGTEQGRPAAPLNVVQPSEAPAEEDDFKPRPIIPMLYVVPRSKKV
VFDKEHMSCQQAFEQFATQKGLGWREQGPGKEQDGAEAERAELAAEAASAFSKMKMEIKK
SRRHPLGKPPTRSPLSVVKQETSSDEEMFPFSGEEDMSDPEALKSLLSFQWKNKALNFPA
ERKFNAAAALSEPYCAVCTLFYPYNQSSQVEKEAAPISTGEPSSFVHLSKCGQKTKPLIP
EMCFTSSGENTEPLPSNSYIGEDGTSPLISCAKCCLQVHASCYGIRPELVNESWSCSRCS
AGAWAAECCLCNLRGGALQMTTDGRWVHVICAIAVPEARFLNVIERHPVDISAIPEQRWK
LRCVYCRKRMKKVSGACVQCSYEHCSTSFHVTCAHAAGVPMEPDDWPYVVSITCFKHKAA
NQNVPFRREVALGQTVITKNRNGLYYRCRVIGTSTQTFYEVNFDDGSYSDNVYPESIISR
DCIQMGPPPEGELVQLQWTDGIIYKAKFIAAQISQIYQVEFEDGSQLMVKRGDIYTLEEE
LPKRVKSRLSLSTGAPQEDAFLGDEVRAAKRPRLGNPRNPEEYGQTPDYLAFMESLLQTQ
YQPGTQSSMF
NT seq 3273 nt   +upstreamnt  +downstreamnt
atggggtcggaaaacccgagcccgcagaaccccggctgcaagatcatgaccttccggccc
tcgctggaggagttccgcgacttcgggaggttcatcgccttcatggagtcccagggagcc
caccgggcagggctggccaaggtgatcccccccaaggagtggaagccgcggcggacgtac
gatgacatcgatgacatggtgatcccagcgcccatccagcaggtggtcacgggccagtca
gggctcttcacccagtacaacatccagaagaagcccatgaccgtgggcgagtaccggcgc
ctggccaacagcgagaagtactgcacccctcgccaccaggattttgaggacctggagcgc
aagtactggaagaatctcacctttgtgtctcccatttatggggctgatatcagtggctcc
ctgtatgatgcagacgtggatgagtggaacattggcaatctgaacaccctcctggacatg
gtggaacacgagtgtggcatcatcatcgagggtgtgaacactccctacctctactttggg
atgtggaagacaacttttgcttggcatacagaggacatggatctctacagcatcaactac
ttgcattttggggagcccaaatcgtggtatgccattcccccggaacacggcaagaggctg
gaacgcctggcaaaaggatttttcccaggaagctctcagggatgtgatgctttcctccgt
cacaagatgaccctcatttctccctccatcctgaagaaatacgggattccctttgacagg
atcacccaggaagctggggagtttatgatcacatttccttacggttaccacgctggcttc
aaccatggcttcaactgcgccgagtccaccaacttcgccaccctgcgctggattgactat
ggcaaaatggcaacacagtgcacgtgccgcaaggacatggtgaagatctccatggatgtg
tttgtcagggtgctgcagcccgagcgctacgagctctggaagcagggcaaggacatcgct
gtcctggaccacatgaagcccacggccctgagcagccccgagctcgacgcctggaacgag
accaaggcagagctgaaggcaaaactgctccgcaggataggagatgaggaagaggacaac
aaacaccggtctcacagaaaaaggagtcaacccagaagacacaaaacagaggatcagaag
tctcttggggatgtcatggctattgaaactgccttggaagatgtgaaagtaaaagaggag
ctgaaaagggggccggatctggaggaagaggagagaagcaaagggatggagggagaagca
gagtgcaaggccaaggcgcggcccccgaaggccaagggcgagcggaagaagaagcagctg
ttcccccctcagccccccgtgccgcccccggggcccatcccggccccccaaccacctccc
gaggccggcccgggggcggcgcggccgccgggacccccgccagccccgggcacggagcag
ggccggcccgcggcgcccctgaacgtggtgcagccctcggaggcgccggccgaggaggac
gacttcaaaccacggcccatcatccccatgctgtacgtggtgccccgcagcaagaaggtg
gtgttcgacaaggagcacatgtcctgccagcaggccttcgagcagttcgccacgcagaag
gggctgggctggcgcgagcagggccccggcaaggagcaggacggcgccgaggcggagcgc
gccgagctcgcggcggaggctgcttctgccttctccaagatgaagatggagatcaagaag
agccgccggcacccgctgggcaagcccccgacgcgctccccgctgtccgtggtcaaacag
gagacctcgagtgatgaggaaatgtttccattttctggagaggaagatatgagtgatcca
gaggctttgaaatctttactttccttccagtggaagaacaaagcacttaatttcccagct
gaaaggaagttcaatgcagctgctgccctgagtgagccatactgtgctgtctgcaccctc
ttctacccctataaccagtcctcacaggtggagaaggaagctgcccccatctccacagga
gagccgtcctcgttcgtgcacctttccaagtgtgggcagaagaccaagcccctgatccca
gagatgtgctttacctcaagtggagaaaacaccgagccccttccttcaaattcctacatt
ggagaggatggaaccagtcccttgatatcctgtgccaaatgctgcctgcaggttcatgct
agctgttacgggatacgcccggagctggtgaacgagagctggtcgtgctcgcggtgctcg
gccggcgcctgggcagcggaatgttgcctgtgcaatctcaggggaggggctctccagatg
accactgatggccggtgggtccacgtaatctgtgctattgctgtccccgaggcgcgtttc
ctcaatgtcatcgagcgtcatcccgtggatatcagcgccatccccgagcagaggtggaag
ctgaggtgtgtgtactgcaggaagaggatgaagaaggtgtctggggcctgtgtccagtgc
tcctacgagcactgctccacctccttccacgtgacgtgcgcgcacgcggccggcgtgccc
atggagcccgacgactggccctacgtcgtgtccatcacctgcttcaagcacaaagcagca
aaccagaacgtcccgttccggagggaggtggccctggggcagacagtgatcaccaagaac
aggaacgggctctactatcgctgcagggtcatcggcaccagcacccagaccttctacgaa
gtcaacttcgacgatggctcctacagtgacaacgtttaccccgagagcatcattagcagg
gactgcatccagatggggcctcctccggagggggagctggtgcagctgcagtggacggac
ggcatcatctacaaggccaagttcattgcagcccagatcagtcagatttaccaggtggag
tttgaagatggctctcagctaatggtaaagcgtggggatatttataccttggaggaagaa
cttcccaagagagtcaagtctcgcctgtccctcagcactggggctcctcaggaagatgca
tttttgggagatgaagtgagagcagccaagcgtccccggctggggaatccaagaaatcct
gaagaatatggacaaacgccagattacttggcctttatggagagcctgttgcagacacag
taccagcctgggactcagagcagcatgttttaa

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