Lonchura striata domestica (Bengalese finch): 110477942
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Entry
110477942 CDS
T05897
Symbol
SMOC2
Name
(RefSeq) SPARC-related modular calcium-binding protein 2 isoform X1
KO
K24354
SPARC-related modular calcium-binding protein
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110477942 (SMOC2)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110477942 (SMOC2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Thyroglobulin_1
Thyroglob_assoc
SPARC_Ca_bdg
Kazal_2
EF-hand_7
EF-hand_6
EF-hand_5
CFAI_KAZAL
Motif
Other DBs
NCBI-GeneID:
110477942
NCBI-ProteinID:
XP_021399876
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Position
3:40349099..40487243
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AA seq
458 aa
AA seq
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MWVPLLLLLPELLPAVPAQKLSALTFLRVDQDKDRECSLDCAGSPQKSLCASDGRTFLSR
CEFQRAKCKDPQLEIAYRGNCKDVSRCVAERKYTQEQARKEFQQVFIPECNDDGTYSQVQ
CHSYTGYCWCVTPNGRPISGTAVAHKTPRCPGSVSEKLPQREGAGKTVSLQIFSILNSDD
ASAPSLETQPQGDEEDIASRYPTLWTEQVKSRQNKTNKSSASSCDQELQSALEEAKQPQK
DNVFIPECAQGGLYKPVQCHPSTGYCWCVLVDTGRPIPGTSTRYEQPKCDNGARAHPTKT
KDLYKGRQLQGCPGAKKNEFLTSVLDALSTDMVHAVSDPSLSSSRVSEPDPNHTLEERVV
HWYFKQLDKNSSGDIGKKEIKPFKRFLRKKSKPKKCVKKFVEYCDVNNDKSLSVQELMGC
LGVTKEEGKAETKKRHTVPRTNTESTSSSRQQVSKKQG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgtgggtgccgctgctgctgctgctgccggagctgctccccgccgtgccggcgcagaag
ctctccgccctcacgtttttgagagtggaccaagacaaagacagagaatgcagcctggac
tgtgcaggttcccctcagaaatcactctgtgcatctgatggaagaacttttctgtcccgg
tgtgagtttcaacgagcaaaatgcaaagaccctcagctggaaatagcctaccgtggcaac
tgcaaagatgtttccagatgtgtggctgagaggaagtatacccaagaacaagctcgcaaa
gaatttcaacaagtgtttatcccagaatgcaatgatgacggcacatatagtcaggttcag
tgccatagctacactggatactgctggtgtgtcactcccaatggccgtcctatcagtggt
actgctgtggcccacaaaactccccgctgcccaggttcagtgagtgagaagctgccacaa
cgagaaggtgcaggcaaaacagtctccttgcaaatcttttccattctgaattcagatgat
gcctcagctccctcgctggagactcagcctcaaggtgatgaagaagatatagcttctcgt
tatcctaccttatggactgagcaagtaaagagtaggcagaacaaaaccaataaaagctca
gcatcatcatgtgatcaagaacttcagtcagccctggaggaagcaaagcagccccagaaa
gacaatgtgttcataccagagtgtgctcagggcggcctctacaaaccagtgcagtgccat
ccttccacaggctactgctggtgtgttctggtggatacaggacgtcccatccccggtaca
tcaaccaggtatgaacaacctaaatgtgataatggtgccagagctcaccctacaaaaaca
aaggatttgtacaaagggcgccagcttcaaggttgtcctggggctaagaagaatgagttc
ctaacgagtgttttggatgcattgtccacagatatggtgcacgcagtctctgatccatca
ctgtcttccagccgtgtttctgagcctgatccaaatcatactctggaagagagagttgtc
cattggtatttcaaacagctagataaaaattccagtggtgatatcggcaagaaggaaatc
aaaccatttaagagattcctaagaaagaaatccaagccgaaaaaatgtgtgaagaagttt
gtggaatactgtgatgtgaacaatgataaatccttgtcagttcaagaattaatgggctgc
ttgggagtaacaaaagaagaaggtaaagcagaaacaaagaaacgccatacagtccctaga
accaacactgagagcacttcatccagcaggcagcaagtttcgaagaagcaagggtga
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