Lonchura striata (white-rumped munia): 110477993
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Entry
110477993 CDS
T05897
Symbol
CPSF6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6 isoform X1
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
lsr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110477993 (CPSF6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110477993 (CPSF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110477993 (CPSF6)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
110477993 (CPSF6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSLD_CPSF6
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
110477993
NCBI-ProteinID:
XP_021399945
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All DBs
Position
1A:complement(29790111..29817083)
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AA seq
583 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDSLPPSV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPPSNRGRGRFPGAIPGGDRFPGPAGPGGPPPPFPAGQTPPRPP
LGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPV
PGYGPPPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA
FFPPPANSGIPTSDSRGPPPTDPYGRPPPYDRGDYGPPGRRFTGNNMSIREKLHIPFYGR
HTKNNTQNSGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDYGSAIETLV
TAISLIKQSKVSADDRCKVLISSLQDCLHGIESKSYGSGSRRRERSRERDHSRSREKSRR
HKSRSRDRHDDYYRERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggcgtggaccacatcgacatctacgccgatgtgggcgaggagttcaaccag
gaggctgaatatggtgggcatgatcagattgatttatatgatgatgtaatttctccatct
gcaaataatggagatgctccagaggatcgtgattacatggattctcttccaccatctgtt
ggggatgatgtaggtaaaggagctgcaccaaatgttgtctatacatatactggaaagaga
attgccttgtacattggaaatctcacttggtggacaacagatgaagacttaactgaagca
gttcattcactgggggtaaatgacattttggagataaaattttttgaaaatcgtgctaat
ggccagtctaaggggtttgcccttgtgggtgtgggatcagaagcatcctccaaaaagctg
atggatttgttgcctaaaagagaattgcatgggcagaatcctgttgtaactccgtgtaat
aaacagtttctgagtcagtttgaaatgcagtcaaggaaaaccacacagtctggccagatg
tctggggaaggtaaagctggtcccccaggaggaagctcacgagcagcatttccacctagt
aatagaggtcggggccgttttccaggtgccattccaggtggagatagattccctggaccg
gcagggccaggagggccaccaccgcctttcccagctggacaaactcccccacgtcctccc
ttaggtcctcctggcccaccaggcccaccaggccctccacctcctggtcaggtcctccca
cctccattagctggacctcctaatcgtggtgatcgtccaccaccaccagttctgtttcca
ggacagccttttggtcagcctccacttgggccacttcctccaggccctccaccaccagtt
ccaggctatgggccaccaccaggtccaccaccacctcagcagggtccacctccacctccg
ggtccatttccccctcgtccacctggtcctcttgggccacccctgactcttgctcctcct
ccacatctccctgggccaccgccaggtgctccaccaccggcaccacatgtgaatccagct
ttcttccccccacctgccaatagtggcatacccacttcagacagtcgtgggccacctccg
acagatccatatggccgacctccaccatatgacagaggtgactatgggccacctggaagg
cgtttcactggaaataacatgtccataagagaaaaattacatattccattctatgggagg
cacacgaaaaataatactcaaaactcagggagagaaatggatgctgcgaggacacctctg
agtgaagcagaatttgaagaaatcatgaatagaaatagggcaatctcaagcagtgccatt
tcaagagctgtatcagatgccagtgctggggactatggaagtgctatagagaccttggta
actgcaatttccttaatcaaacagtccaaagtatctgcagatgatcgctgcaaagtactt
attagttctctgcaggactgccttcatggaattgagtccaagtcttatggttctggatcc
agaagacgtgagcgatccagagagagggaccacagtaggtcacgagaaaaaagtaggcgc
cacaaatcgcgtagtagagatcgtcatgatgactattaccgggaaagaagccgtgagaga
gagagacatcgcgatcgtgacagagatcgtgacagagaacgagacagagagagagaatat
cgtcaccgttaa
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