Lonchura striata (white-rumped munia): 110478046
Help
Entry
110478046 CDS
T05897
Symbol
ATG16L1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04136
Autophagy - other
lsr04140
Autophagy - animal
lsr04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110478046 (ATG16L1)
04136 Autophagy - other
110478046 (ATG16L1)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
110478046 (ATG16L1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110478046 (ATG16L1)
03029 Mitochondrial biogenesis [BR:
lsr03029
]
110478046 (ATG16L1)
Membrane trafficking [BR:
lsr04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
110478046 (ATG16L1)
Others
Specific organelles associated proteins
Auto phagosome
110478046 (ATG16L1)
Mitochondrial biogenesis [BR:
lsr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
110478046 (ATG16L1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
ATG16
WD40
Beta-prop_THOC3
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_WDR3_2nd
WD40_Gbeta
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_Aladin
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_TEP1_C
Beta-prop_DCAF4
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_EIPR1
NBCH_WD40
eIF2A
Beta-prop_IFT140_1st
Beta-prop_ACSF4
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_NWD2_C
Beta-prop_VPS8
Beta-prop_WDR41
Ge1_WD40
Beta-prop_WDR19_1st
Tricorn_2nd
Beta-prop_SPT8
ZapB
INO80F
HTH_6
DUF8181
Lipoprotein_6
PALB2_WD40
Peptidase_M15_4
HEF_HK
DUF6383
WHD_CYT4
YicC-like_N
Fez1
Motif
Other DBs
NCBI-GeneID:
110478046
NCBI-ProteinID:
XP_021400056
LinkDB
All DBs
Position
9:25726288..25747089
Genome browser
AA seq
624 aa
AA seq
DB search
MASGLRAAGFPRWKRHIAEELRRRDRLQRQAFEEIITQYNKLLEKSDLHAVLADKLQAEK
YDMQSRHEISPGHDSTWNDAQLQELAQLKIKHQEELTELHKKRGELAQSVIDLNNQMQQK
DKEMQMNEAKIAEYLQKISELETECQELRSKLQDLERANQTLKDEYDALQITFNALEEKL
RKTTEDNQELVSRWMAEKAQEANRLNAENEKDSRRRQARLQKELAEAAKEPLPVEPRDDD
IEVLADETSDTAEETSPVRAVSRTSSKRLSQPAGGLLDSISNIFGLSESPLLGHQSSDTA
RRRSLSSFPAPQDNTEPHPGASKEVRVPTTAICVFDAHDGEVNAVQFSPGSRLLATGGMD
RRVKLWEVLGDRCEPKGSLSGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDNRLRHT
LTGHSGKVLSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVM
SGHFDKKIRFWDIRTESIVKELELLGRITALDLNPERTELLTCSRDDLLKIIDLRIGAVK
QTFSAQGFKCGSDWTRVVFSPDGNYVAAGSADGALYIWNVLTGKLERTLAKHHSSSINAV
TWSPAGAHVVSVDKGNKAVLWAEF
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggggctgcgcgccgccgggtttccccgctggaagcggcacatcgcggaggag
ctgcggcggcgggaccggctgcagcgccaggcgttcgaggagatcatcacccagtataac
aagctgctggagaagtcagaccttcatgcagtgctggctgataaacttcaagcagaaaaa
tatgacatgcagagcagacatgagatcagcccaggacatgatagcacatggaatgacgct
cagctgcaggagctggcccagctgaagataaagcaccaagaggagctgactgagctgcac
aagaaacgtggagagttggcccagtctgttattgatttgaacaaccaaatgcagcagaag
gacaaagagatgcagatgaatgaagctaagattgcagagtatttgcaaaagatttctgaa
ctggaaacagagtgccaggaattgcgtagcaaactgcaagatcttgagcgagctaatcag
acactgaaagacgaatatgatgctctccagatcaccttcaatgccttggaggagaaacta
aggaaaactactgaagacaaccaggagctggtctcacgttggatggcagagaaagcacaa
gaagccaatcgtttgaatgcagaaaatgaaaaagattcaaggagacgccaggccaggctg
cagaaggagctggcagaagctgccaaagaacccttgcccgttgaacccagggatgatgat
atcgaagtgcttgcagatgaaacctctgacacagctgaggaaacctctccggtgcgagct
gtcagccggacatccagtaagcgactctcccagccagctggaggccttctggactctatc
agtaatatctttggtctgtctgagtctccccttttgggacatcagtcttctgatactgcc
aggaggcgttctctgtcctcattccctgcaccccaggataacacagagccacatccaggt
gccagtaaagaagtgagagtgcccactactgccatatgtgtctttgatgcacatgatggg
gaggtgaatgcggtgcagttcagccccggctcccggttactagcaacaggaggcatggac
cggagggttaaactttgggaagtcttgggagataggtgtgagcccaaaggttccctctct
ggcagtaatgctgggattacaagcatagaatttgatagcgctggttcttacctcttagca
gcttcaaatgactttgccagcagaatctggacagttgatgacaatcgattacggcacacc
cttacaggtcacagtggtaaagttctttcagccaagttcttgctggacaatgcacgtatt
gtttcgggaagtcatgaccggaccctcaagctctgggacctccgcagcaaagtttgtata
aaaacagtgtttgcaggatctagctgcaatgacatcgtgtgtactgagcagtgtgtaatg
agtggacattttgataagaaaattcgtttctgggacatcaggactgaaagcatagtaaaa
gaactggagttgctgggaagaatcacagctctggacctgaacccggagcgaacggagctt
ctgacctgttcccgtgatgatctactcaagatcattgatctgcgcattggtgctgtcaag
cagacattcagtgcccagggattcaaatgtggctctgactggacaagagttgtgttcagc
cctgatggtaactatgtggctgctggctcagctgatggggctctctacatttggaatgtg
cttactgggaaattggagaggacacttgcaaagcatcacagttcttctatcaatgcagtt
acgtggtcaccagcgggtgcccacgtggtgagtgtggacaaaggaaacaaggctgtgctg
tgggctgagttctga
DBGET
integrated database retrieval system
