Lonchura striata (white-rumped munia): 110478513
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Entry
110478513 CDS
T05897
Symbol
TRIM54
Name
(RefSeq) LOW QUALITY PROTEIN: tripartite motif-containing protein 54
KO
K10653
tripartite motif-containing protein 54
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
110478513 (TRIM54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110478513 (TRIM54)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110478513 (TRIM54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-RING_5
zf-B_box
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
CYP38_PsbQ-like
RHH_9
Sina_RING
Zn_ribbon_FGT1_2
DUF5799
Motif
Other DBs
NCBI-GeneID:
110478513
NCBI-ProteinID:
XP_031360327
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All DBs
Position
3:complement(105849401..105852675)
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AA seq
406 aa
AA seq
DB search
MNFAVGLKPLLAEARSMESLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP
LWQSRGSSAVPSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESARPLHAKA
EQHLMCEEHEDERINIYCLRCEVPTCSLCKVFGAHKDCEVAPLPAVYQRQKVGGPWGLGG
LRVPAQPPSHPAPLLXQSELSDGIAMLVAGNDRIQAIITQMEEICHTIEENGRRQKQHVG
LRFDALYGILEERKKELLQSIAAEQEAKLQRVRGLIRQYGDHLEASSKLVESAIQAMEEP
QMALYLQHSKELLKKITDMSKASMSSRPEPGYENMDHFSINVDYVAEMLRTIEFQTEPLG
EDEGDGPGDGSEAAADEDRLDSLEVPEAAEDVGPRQKPASSPHGQH
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcgcggtagggctgaagccgcttctggcggaggcgcggagcatggagagcctg
gagaagcagctcatctgccccatctgcctggagatgttctccaagcccgtggtcatcctg
ccctgccagcacaacctctgccgcaagtgcgccaacgacgtcttccaggcctccaaccct
ctgtggcagtcgcggggctccagcgcggtgccgtcgggcgggcggttccggtgcccgtcc
tgccggcacgaggtggtgctggaccggcacggggtgtacggattgcagcggaacctgctc
gtggagaacatcatcgacatctacaagcaggagtcggcccgaccccttcatgccaaggct
gagcagcacctgatgtgcgaggagcacgaggacgagcggatcaacatctactgcctgcgc
tgtgaggtgcccacctgctccctctgcaaggtgttcggggcgcacaaggactgcgaggtg
gccccgctgccggccgtctaccagcgccagaaggtggggggaccctggggtctcgggggg
ctgagagtgcctgcacagccaccctcacacccagcccctctcctgnnccagagcgagctc
agcgatggcattgccatgctggtggcggggaatgaccggatccaggccatcatcacacag
atggaggagatctgccacaccatcgaggagaacggccggcggcagaagcagcacgtgggg
ctgcggtttgacgcgctctacgggatcctggaggagcgcaagaaggagctgctgcagagc
atcgcagccgagcaggaggccaagctgcagcgagtccgtgggctcatccgccagtacgga
gaccacctggaggcctcctccaagctggtggagtcagccatccaggccatggaggagccc
cagatggccctgtacctgcagcactccaaggaactcctgaaaaagatcacagacatgtcc
aaggcatcaatgagcagccgccctgagcctggctatgagaacatggaccacttctccatc
aacgtggactatgtggctgagatgctgaggaccatcgagttccagacagagcccctgggt
gaggatgagggggatggacctggggacggcagtgaggctgcagcagacgaggaccggctg
gacagtctggaggtgcccgaagctgctgaagatgtggggccgaggcagaagccagcgagc
tctccccatggtcagcactga
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