Lonchura striata domestica (Bengalese finch): 110478530
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Entry
110478530 CDS
T05897
Symbol
SCN8A
Name
(RefSeq) sodium channel protein type 8 subunit alpha
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsr04040
]
110478530 (SCN8A)
Ion channels [BR:
lsr04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110478530 (SCN8A)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
ATP-synt_B
GPHH
IQ
Motif
Other DBs
NCBI-GeneID:
110478530
NCBI-ProteinID:
XP_021400882
LinkDB
All DBs
Position
29:1093441..1162466
Genome browser
AA seq
1986 aa
AA seq
DB search
MAARLLAPPGPESFKPFTPESLANIEKHIAEMKKKQRSKQDSSHRDDDEDSKPKPNSDLE
AGKNLPFIYGDIPKGLVAVPLEDFDPYYMTQKTFVVLNRGKTLFRFSATPALYILSPFNL
FRRIAIKILIHSVFSMIIMCTILTNCVFMTPKSPKSPKYPNPPNPWNPQIRYTFTGIYTF
ESLVKIIARGFCIDGFTFLRDPWNWLDFSVIMMAYVTEFVDLGNVSALRTFRVLRALKTI
SVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVIWPINVNET
FLDNGSKGFDWEEYTNNMSNFYIIPGAPDPLLCGNSSDAGQCPEGYTCMKAGRNPNYGYT
SFDTFSWAFLALFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVA
MAYEEQNQATLEEAEQKEAEFKAMLEQLKKQQEEAQAAAMVTSAGTVSEDAVEDDGGGRM
SRSSSEISKLSSKSAKERRNRRKKRKDRELSEGDEKCDNEKVFKSESEDGMRRKAFRLPD
NRLGRKFSIMNQSLLSIPGSPFLSRHNSKSSIFSYKGRFRDPGSENEFADDEHSTVEESE
GRRDSLFIPIRGRDRRSSYSGYSGYSQGSRSSRIFPALRRSIKRNSTVDCNGVVSLIGGP
PSSMPGGRILPEGTTEIEIRKKPGGSLLVSMDQVNASYGRKDRTNSVMTGLTNTLVEELE
ESQRKCPPCWYKFANTFLIWECHPYWMKLKEIVNLIVMDPFVDLAITICIVLNTLFMAME
HHPMTPEFEHVLSVGNLVFTGIFTAEMFLKLIAMDPYYYFQEGWNIFDGFIVSLSLMELS
LADVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKSYKECVCKINPECELPRWHMHDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMC
LIVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDGEMNNLQISVIRIKKGIAWTKA
KVREFMQAHFKQREADEVKPLDELYDKKVNCIANHTGADINRDVDFLKNGNGTTSGIGSS
VEKYIIDEDHMSFINNPNLTVRVPIAVGESDFENLHTEDFSSDTDPDGSKEKLDESSSSE
GSTIDIKPEVEEVPVEAPEEYLDPDACFTEGCMQRCKCCQVNIEEGLGKSWWTLRKTCFL
IVEHNWFETFIIFMILLSSGALAFEDIYIEQRKTIRTILEYADKVFTYIFILEMLLKWCA
YGFVKFFTNAWCWLDFLIVAVFFFSLIANAFFFSELGAIKSLRTLRALRPLRALSRFEGM
RVVVNALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYHYCFNETAEHRFEIEVVNNK
TDCEALMPPNSTEIRWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRKQEEQPK
YEDNIYMYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMK
KLGSKKPQKPIPRPLNRIQGAVFDFVTQQAFDIVIMMLICLNMVTMMVETDTQSKQMEDI
LYWINFVFVIFFTCECVLKMFALRHYYFTIGWNIFDFVVVILSIVGMFLAEIIEKYFVSP
TLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNF
AYVKHEAGIDDMFNFETFGNSMICLFQITTSAGWDGLLLPILNRPPDCDLDKEHPGSGFK
GDCGNPSVGIFFFVSYIIISFLIVVNMYIAIILENFSVATEESADPLSEDDFETFYEIWE
KFDPDATQFIEYSKLADFADALEHPLRVPKPNTIELIAMDLPMVSGDRIHCLDILFAFTK
RVLGDSGELDILRQQMEERFVASNPSKVSYEPITTTLRRKQEEVSAVVIQRAYRARLARR
GFGGRRAATKLDNGAATREKKEGTPSTASLPSYDSVTKPEKEKQQRAEEGRREKAKRQKD
ARVAKC
NT seq
5961 nt
NT seq
+upstream
nt +downstream
nt
atggcagcgcggctgctcgcaccaccgggccccgagagcttcaagcccttcacgccggag
tcgctggccaacatcgagaagcacatcgctgagatgaagaagaagcagcgctccaagcag
gacagcagccaccgcgatgacgacgaggacagcaaacccaaacccaacagtgacctcgag
gcgggcaagaatttgccttttatctacggggacatccccaaagggctggttgctgtgccg
ctggaggactttgacccttattatatgacccagaaaacctttgtagtactaaaccgaggg
aaaacgctcttccgattcagcgccactcctgccttgtacattttaagtccttttaatctc
tttcgaagaatagcaattaaaattttgatacattcggtgttcagcatgatcatcatgtgc
accatcctcaccaactgcgtcttcatgaccccaaaatccccaaaatcccccaaataccca
aatcccccaaatccctggaatccccagatcaggtacacgttcaccgggatttacaccttc
gagtcgctggtgaagatcatcgcgcgcggcttctgcatcgacggcttcaccttcctgagg
gacccctggaactggctggacttcagcgtcatcatgatggcatatgtcacagagtttgtg
gaccttgggaatgtctcagcattgagaactttcagagttctccgagctttgaaaactatc
tctgtcatcccaggcttgaagaccatcgtgggcgccctgatccagtctgtgaagaagctg
tcggacgtgatgatcctgacagttttctgcctcagtgtctttgccctcatcgggctccag
ctcttcatgggcaatttaaggaacaaatgtgtgatttggccaattaatgtcaatgagacc
ttcctggataacggctccaagggcttcgactgggaggagtacaccaacaatatgtccaat
ttttacatcattcctggtgcccccgaccctttgctgtgtggtaacagctcagatgcaggc
caatgtccagagggatacacgtgcatgaaggcaggacggaaccccaactacggctacacc
agctttgacaccttcagctgggctttcctggctttatttcgccttatgactcaggacttt
tgggagaacttgtatcaattaactttacgagcggcaggaaaaacctacatgatcttcttt
gtgctggtgatctttgtgggctccttctacctggtgaatctgattttggccgtggtggcc
atggcctacgaggagcagaaccaggcgaccctggaggaggcagagcagaaggaggcagaa
ttcaaggccatgttggagcaattgaaaaagcagcaggaagaagcacaggctgctgccatg
gtcacctcggcggggacggtgtctgaggatgctgtggaggatgacggtggggggaggatg
tctcggagctcctcggagatctccaagctcagctccaagagcgccaaggagcggcggaac
aggaggaagaagaggaaggacagggagctgtcggagggggacgagaagtgcgacaacgag
aaggtgttcaagtcggagtcggaggatggcatgaggaggaaagcgttcaggctgcccgat
aacaggctggggaggaaattttccatcatgaaccagtctctcctcagcatcccgggctcc
ccgttcctctcccgccacaacagcaagagcagcatcttcagctacaagggacgcttccgc
gacccaggctcggagaatgagttcgcagacgacgagcacagcacggtggaggagagcgag
ggcaggagggactcgctcttcatccccatccgcggccgcgaccggcgcagcagctacagc
ggctacagcggctacagccagggcagccgctcctcgcgcatcttccccgcgctgcgccgc
agcatcaagaggaacagcaccgtggactgcaacggcgtcgtgtccctcatcggggggccg
ccctccagcatgcctgggggccgcatcctgcccgaggggaccactgagattgaaatcagg
aagaagcctggtgggtctctcttggtctcaatggatcaggtgaacgcgtcctacggaagg
aaggatcgcaccaacagcgtcatgaccggcctgaccaacacccttgtggaggagctggaa
gagtcccagaggaagtgtcccccttgctggtacaaatttgccaacaccttcctgatctgg
gaatgccacccgtactggatgaagctgaaggagatcgtgaacttaattgtcatggatcct
tttgttgacttggccatcaccatctgcatcgtgctgaacacgctgttcatggccatggag
caccaccccatgacccccgagttcgagcacgtgctctccgtaggaaacctggttttcact
gggattttcacggcagaaatgttcctgaagctcattgcaatggatccgtactattatttt
caagaaggctggaacatctttgatgggtttattgtctccctgagcttgatggagctgagt
ctggcagatgtggagggactttccgtgctgcgatctttccgattgctgagagtcttcaaa
ctggccaaatcctggcccactctgaacatgctgatcaaaatcattggtaactcagtgggt
gccttggggaatttgaccttggtgctggccatcatcgtgttcatcttcgccgtggtgggg
atgcagctcttcggcaaaagctacaaggagtgtgtctgcaagatcaatccggagtgtgag
ctaccccgctggcacatgcacgatttcttccactccttccttattgtcttccgtgtgttg
tgtggggagtggattgagaccatgtgggattgtatggaagtggcaggacaggccatgtgc
ttgattgtcttcatgatggtcatggtcatcggaaatttggtggtgctgaacctgttcttg
gccttgctgctgagctccttcagcgccgacaacctggcggccacggacgacgacggcgag
atgaacaacctgcagatctcggtgatccgcatcaagaagggcatcgcctggaccaaggcc
aaggtccgggagttcatgcaggcccacttcaagcagagggaggccgacgaggtgaagccc
ttggacgagctctacgacaagaaggtcaactgcatcgccaaccacaccggcgccgacatc
aaccgcgacgtcgacttcctgaagaacggcaacggcaccaccagcggcatcgggagcagc
gtggagaagtacatcatcgacgaggaccacatgtccttcatcaacaaccccaacctgacc
gtgcgcgtccccatcgccgtgggcgagtccgacttcgagaacctccacacggaggatttc
agcagcgacaccgaccccgacggcagcaaggagaagctggacgagagcagctcctccgag
ggcagcaccatcgacatcaagcctgaggtggaagaggtgcccgtggaggccccggaggag
tacctggaccccgatgcctgtttcacagaaggttgcatgcagcgctgcaagtgctgccag
gtgaacatcgaggaggggctggggaagtcgtggtggaccttgaggaaaacgtgcttcctc
atcgtggagcacaactggttcgagaccttcatcatcttcatgatcctgctgagcagcggg
gctctggcttttgaggacatctacatcgagcagaggaaaaccatcaggaccatcctggag
tacgccgacaaggtcttcacctacatcttcatcctggagatgctgctcaagtggtgcgcc
tacggcttcgtcaagttcttcaccaacgcctggtgctggctggacttcctcatcgtggct
gtctttttttttagccttatagctaatgccttttttttttcggaactaggtgccataaaa
tcccttaggaccctaagagccttgaggcctttaagagcgttgtcccgatttgaggggatg
agggtggttgtcaatgccttggttggcgctatcccttccattatgaatgtcttgttggtc
tgccttatcttctggctgattttcagcattatgggggttaacctgtttgccgggaaatat
cattactgctttaatgaaacagctgagcaccgctttgagatagaggttgtaaacaacaag
acagactgcgaggcgctgatgccgcccaactccactgagatccgctggaagaacgtcaaa
attaactttgacaacgtcggcgccggatacctggctctgctgcaagtcgctacattcaag
ggctggatggacatcatgtatgcagctgtcgattccagaaagcaagaagagcagcccaag
tacgaggacaacatttacatgtacatttattttgtgatcttcatcatcttcgggtccttt
ttcaccctgaacctcttcatcggcgtcatcatcgacaacttcaaccaacagaagaagaag
tttggaggtcaggatattttcatgacagaagagcagaagaagtattacaacgccatgaag
aaactgggctccaagaagccccaaaaacccatcccccgacctctgaaccgcatccaagga
gccgtcttcgacttcgtcacccagcaagccttcgacatcgtcatcatgatgctcatctgc
ctcaacatggtgaccatgatggtggagacggacacgcagagcaagcagatggaggacatc
ctttactggatcaacttcgtgttcgtcatcttcttcacctgcgagtgcgtgctgaagatg
ttcgccttgaggcactactacttcaccatcggctggaacatcttcgacttcgtggtggtc
atcctgtccatcgtggggatgttcctggccgagatcatcgagaagtacttcgtgtcgccc
acgctgttccgcgtgatccgcctggcgcgcatcggccgcatcctgcgcctcatcaagggc
gccaagggcatccgcacgctgctcttcgccctcatgatgtccctgcccgccctcttcaac
atcggcctcctgctcttcctcgtcatgttcatcttctccatcttcggcatgtccaacttc
gcctacgtcaagcacgaggccggcatcgacgacatgttcaacttcgagaccttcggcaac
agcatgatctgcctgttccagatcaccacgtcggccgggtgggacgggctcctgctgccc
atcctcaaccgcccgcccgactgcgacctggacaaggagcaccccggcagcggcttcaag
ggcgactgcggcaacccctcggtggggatcttcttcttcgtcagctacatcatcatctcc
ttcctcatcgtggtcaacatgtacatcgccatcatcctggagaacttcagcgtggccacg
gaggagagcgcggacccgctcagcgaggacgacttcgagacgttctacgagatctgggag
aagttcgaccccgacgccacgcagttcatcgagtacagcaagctggcggacttcgccgac
gccttggagcaccccttgcgcgtgcccaagcccaacaccatcgaactcatcgccatggac
ctgcccatggtcagcggcgacaggatccactgcttggacatcctcttcgccttcaccaag
cgcgtcctgggggacagcggcgagctggacatcctgaggcagcagatggaggagaggttt
gtggcttccaacccttccaaagtgtcctacgagcccatcaccaccacgctgcggcgcaag
caggaggaggtgtcggcggtggtgatccagagggcgtaccgggctcgtctggcgcggcgc
ggcttcggcggccggagggcggccaccaagctggacaacggggcggccaccagggagaag
aaggaggggacgccgtccacggcctcgctgccctcctacgacagcgtcaccaagcccgag
aaggagaagcagcagcgggcggaggagggcaggagggaaaaggcaaagaggcaaaaggac
gccagggtggccaagtgttga
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