Lonchura striata (white-rumped munia): 110478541
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Entry
110478541 CDS
T05897
Symbol
SMARCD1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110478541 (SMARCD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110478541 (SMARCD1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110478541 (SMARCD1)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110478541 (SMARCD1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110478541 (SMARCD1)
PBAF complex
110478541 (SMARCD1)
GBAF(ncBAF) complex
110478541 (SMARCD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
SWIB_eIF2D
DivIC
Motif
Other DBs
NCBI-GeneID:
110478541
NCBI-ProteinID:
XP_021400904
LinkDB
All DBs
Position
29:896884..903917
Genome browser
AA seq
511 aa
AA seq
DB search
MAARAGFQSGPASGGGAGAAPGAALGPGAPGGAVRMGPAPGQGLYRSPLPGAAYPRPGML
PGGRLAPQGPAMGPPGYGGSPAVRPALAQAGLDQARKRPAPQQLQQVQPQAVPNRNHNAK
KKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRI
FISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIEL
DKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARL
LGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHAL
LMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIAALDNKI
HETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQ
PWAQEAVCRYFYSKVQQRRQELEQALGIRNT
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgggccgggttccagtcggggcctgcgagcggcggcggcgctggggccgcg
cccggggccgcgctgggccccggagcgccgggcggggcggtgcgcatgggcccggcgccg
gggcagggcctgtaccgctcgccgttgcccggagccgcctacccgcgccccgggatgctg
ccgggcggccgcctggcgccgcagggcccggccatggggcctcccgggtacggagggagc
ccagcggtgcggcccgcgctggcgcaggccgggctggaccaggctcgcaagcggcctgcg
ccgcagcagcttcagcaggtgcagccgcaggcggtgcccaaccgcaaccacaatgccaag
aagaagaagatggcagataaaatcctcccacagcggatccgtgagctcgtgcccgaatcc
caggcctacatggacctgctggccttcgagaggaagctggaccagaccatcatgaggaag
cgcctggacatccaggaggctctgaaacgtcccatcaagcaaaagcgaaagctgcgtatt
tttatctccaacaccttcaaccccgccaagtcggacgcggaggacggcgaaggaaccgtc
gcctcctgggagcttcgggtggaaggacggctgttggaggattctgctctgtccaaatat
gatgccaccaagcagaaaaggaaattttcgtccttctttaaatctctggtcattgaactt
gataaagacctgtatggccctgacaatcacctagtagagtggcacaggactgctacgact
caggagacagatggcttccaggtgaagaggccgggggatgtgaacgtgcgctgcactgtc
ctgctgatgctggattaccagcctccccagttcaaactggatccacgcctggctcggctc
ctgggcatccacacccagacccggcccgtgatcatccaggccctgtggcagtacatcaag
acccacaagctgcaggacccccacgagcgggagtttgtcatctgtgacaagtacctgcag
cagatattcgagtcgcagcggatgaagttctccgagatcccacaaaggcttcatgccttg
ctgatgccccccgaaccgatcatcatcaatcatgtgatcagtgttgacccaaatgaccag
aagaagacagcctgctatgacattgacgtggaggtggatgataccctgaaaactcagatg
aattcctttctgctctccacagccagtcaacaggaaattgctgctctggataacaagatc
catgaaacaattgagaccatcaaccagctgaagacacagcgtgaattcatgctgagcttt
gcccgagatcctcagggcttcatcaacgactggctccagtcccagtgccgggatttgaag
acaatgactgatgtcgttgggaatcctgaggaggagcgcagggccgagttctacttccag
ccgtgggcgcaggaagccgtgtgccgatacttctactccaaggtgcagcagagacggcag
gaactggagcaggccctggggatccggaacacatag
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