Lonchura striata (white-rumped munia): 110478570
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Entry
110478570 CDS
T05897
Symbol
CNTN1
Name
(RefSeq) contactin-1
KO
K06759
contactin 1
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110478570 (CNTN1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
lsr04515
]
110478570 (CNTN1)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lsr00537
]
110478570 (CNTN1)
Cell adhesion molecules [BR:
lsr04515
]
Immunoglobulin superfamily
Contactins
110478570 (CNTN1)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
lsr00537
]
Others
110478570 (CNTN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
fn3
Ig_2
V-set
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Interfer-bind
Tissue_fac
DUF4998
Fn3-I_PB4
NDNF
Big_3_4
Motif
Other DBs
NCBI-GeneID:
110478570
NCBI-ProteinID:
XP_021400966
UniProt:
A0A218V5T7
LinkDB
All DBs
Position
1A:complement(36038524..36245700)
Genome browser
AA seq
1024 aa
AA seq
DB search
MMVLQCTIPFEIMAEQKITIWFFICHLITPCFVYSLAAEEGNKGYGPVFEEQPIDTIYPE
ESSDGQVSMNCRARAVPFPTYRWKLNNWDIDLTKERYSMVGGRLVINNPEKSRDAGKYVC
VVSNIFGTVRSSEATLSFGYLDPFPPEERYEVKVREGVGAVLLCEPPYHYPDDLSYRWLL
NEFPVFIALDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPQSD
RAKVYPADIKVKFKDTYALLGQNVTLECFALGNPVPELRWSKYLEPLPASAEISMSGAVL
KIFNIQYEDEGLYECEAENYKGKDKHQARVYVQAAPEWVEHINDTERDIGSDLYWPCVAT
GKPIPTIRWLKNGASFRKGELRMQSLTFDDAGMYQCIAENMHGIIYANAELKIVASPPTF
ELNPMKKKILAAKGGRVIIECKPKAAPKPKFSWSKGTELLVNGSRIRIWDDGSLEIINVT
KLDEGRYTCFAENNRGKANSTGVLEMTEATRITLAPLNVDVTVGENATMQCIASHDPTLD
LTFIWSLNGFVIDFEKEHEHYERNVMIKSNGELLIKNVQLRHAGRYMCTAQTIVDNSSAS
ADLVVRGPPGPPGGIRVEEIRDTAVALTWSRGTDNHSPISKYTIQSKTFLSEEWKDAKTD
PSDIEGNMESATVIDLIPWMEYEFRIIATNTLGTGEPSMPSPRIRTEGAPPNVAPSDVGG
GGGSNRELTITWMPLSREYHYGNNFGYIVAFKPFGEKEWRRVTVTNPEIGRYVHKDESMP
PSTQYQVKVKAFNNKGDGPFSLTAVIYSAQDAPTEIPTDVSVKVLSSSEMSVSWHHVSDK
SVEGYQIRYWAAHDKEAAAQRVQVSNQEYSTKLENLKPNTRYHVDVSAFNSAGYGPPSST
LDVVTRKAPPSQRPRIISSVRSGSRYIITWDHVKAMSNESAVEGYKVLYRPDGQHEGKLF
STGKHTIEVPVPSDGEYVVEVRAHSEGGDGEVAQIKISGAAVGVPTLLLVLVVPALGVLA
CAGF
NT seq
3075 nt
NT seq
+upstream
nt +downstream
nt
atgatggtattgcagtgcacaattccttttgagataatggctgaacagaaaataaccatt
tggtttttcatctgtcatcttattacaccttgttttgtctactccctggcagcagaggaa
ggaaacaaaggctatggacctgtttttgaggagcaacctattgatactatctatccagaa
gaatcttcagatggacaagtttcaatgaactgcagagctcgagcagttccttttccaact
tacagatggaaactcaacaactgggatattgatttaacaaaggagcgctacagtatggtg
ggaggcagacttgttatcaacaatccagagaaatcaagggatgctggaaaatatgtctgt
gtagtgtcgaatatctttggaactgtcagaagcagtgaagccactctgagttttggatat
ctggatccctttccacctgaggaacgttatgaggttaaagtgcgagaaggtgttggagca
gtgcttctttgtgagcccccttaccactacccagatgacctcagttatcgctggcttcta
aatgagttcccagtgttcattgctttggacaaacgacgatttgtgtcacagacaaatggc
aatctttacattgcaaatgtggaagcatcagataagggcaattattcatgttttgtgtcc
agcccttcaataacaaagagtgtattcagtaaatttattccacttattccgcaatctgat
cgagcaaaagtatatcctgctgatatcaaggtgaagttcaaggacacctatgctctcctg
ggacaaaatgtgacactggagtgttttgcgcttggaaatcccgttcctgaactcagatgg
agtaaataccttgaacccttgccagcctctgctgagataagcatgtctggtgcagttctt
aagatcttcaatattcaatatgaagatgaaggactttatgagtgtgaagctgaaaactat
aaaggaaaagataaacaccaagcaagagtttatgtacaagctgctcctgagtgggtagaa
catatcaatgacacagaaagagacataggcagtgacctgtactggccttgtgtagctacg
ggcaagcctattccaacaattaggtggctgaagaatggtgcctcgttccggaaaggtgaa
ctaagaatgcaaagtctgacctttgacgatgccggcatgtaccagtgtatagcagaaaac
atgcacggaattatttatgcaaatgctgaactgaagattgtggcttcacctcctactttt
gaactgaaccctatgaagaagaaaatcttagcagctaaaggagggcgtgtaatcattgaa
tgcaagcctaaagctgctcctaagccaaaattctcctggagcaaaggaacagaattgctt
gtaaatgggagccgcatacgtatctgggatgatgggagcctggaaattatcaatgtcaca
aagctggatgaaggtcgctatacctgttttgcagaaaataaccgaggaaaagccaatagc
actggtgttctagaaatgacagaagctacaaggattactttagctccgttgaacgttgat
gtcaccgttggagagaatgctaccatgcaatgcattgcatctcatgatcccacattagac
ctgacatttatttggtctctaaatggctttgtaatagattttgagaaagaacatgaacat
tatgaacggaatgttatgattaaatccaatggtgagctgctgattaaaaatgttcagctg
cggcatgcagggaggtacatgtgcactgctcagacaattgtggacaactcctcagcttca
gctgaccttgtggtaagaggtcctccaggcccccctggaggtataagagtagaagaaatc
agagacaccgctgtagcacttacctggagtcgtggaacagacaatcatagtcctatttcc
aaatacactatccagtcaaaaacctttctatctgaagagtggaaagatgccaaaacagac
ccatcagatattgaaggaaatatggaatctgctacagtgatcgatttaattccatggatg
gaatatgaatttcggataatagcaacaaacactctggggacaggagaacccagcatgcca
tcaccaaggattagaaccgaaggcgctcctcctaatgtggctccttctgatgttggagga
gggggtggaagcaatcgagagctgacaataacatggatgcctttgtcaagagaataccac
tatggcaataactttggttatatagtggcattcaagccatttggtgagaaagaatggaga
agagttacagttactaatcctgagattggccgatatgtccacaaggatgaatcaatgcca
ccttcaactcagtatcaagtaaaagtgaaagcttttaacaacaaaggggatgggccattc
agtctcactgctgtcatttattcagcacaagatgcaccaactgaaatacctacagatgtg
agcgtaaaggttttgtcatcttctgaaatgtctgtttcttggcaccatgtttctgataaa
tctgtggagggatatcagattcgttactgggctgctcatgataaagaagcagctgcacag
cgggtacaggtgagtaatcaagagtattcgaccaaactggaaaacctgaagcctaacacc
cgctaccatgtggatgtgtctgccttcaatagtgcaggctatggacctcccagcagcacc
cttgatgttgttacaaggaaagcacctccaagccaacgcccaagaattatcagttctgta
agatctggttcaaggtacatcattacctgggatcacgtgaaggcaatgtcaaacgagtct
gccgtcgaaggatataaagtactttataggccagatggacagcatgaaggcaagttgttt
tccactggaaagcacacgatagaggtccccgtccccagcgatggtgaatatgttgttgaa
gtgcgagcacacagtgaaggaggagatggagaagtagcccaaataaaaatttcaggtgcc
gctgttggagtaccaactctgctcctggtcctggtggtgcctgccctgggtgtccttgcc
tgtgcaggattctga
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