Lonchura striata (white-rumped munia): 110478647
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Entry
110478647 CDS
T05897
Symbol
ATG4B
Name
(RefSeq) cysteine protease ATG4B isoform X2
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04136
Autophagy - other
lsr04140
Autophagy - animal
lsr04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
110478647 (ATG4B)
04140 Autophagy - animal
110478647 (ATG4B)
04136 Autophagy - other
110478647 (ATG4B)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsr01002
]
110478647 (ATG4B)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110478647 (ATG4B)
03029 Mitochondrial biogenesis [BR:
lsr03029
]
110478647 (ATG4B)
Peptidases and inhibitors [BR:
lsr01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
110478647 (ATG4B)
Membrane trafficking [BR:
lsr04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
110478647 (ATG4B)
Mitochondrial biogenesis [BR:
lsr03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
110478647 (ATG4B)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
110478647
NCBI-ProteinID:
XP_021401101
LinkDB
All DBs
Position
9:23475558..23495134
Genome browser
AA seq
403 aa
AA seq
DB search
MDAATLTYDTLRFEYEDFPETKEPVWILGRKYSVFTEKEEILLDVTSRLWFTYRKNFPAI
GGTGPTSDTGWGCMLRCGQMIFAQALVCRHLGRDWRWIKGKRQMDNYFNVLNAFIDKKDS
YYSIHQIAQMGVGEGKSIGQWYGPNTVAQVLKKLATFDAWSSLAVHIAMDNTVVMEEIRR
LCQSNVPCAGAAACPALESDVLYNGCPEDVGLRERLALWKPLVLLIPLRLGLTEINEAYI
ETLKHCFMMPQSLGVIGGKPNSAHYFIGYVGEELIYLDPHTTQPVVEPGDSGCLPDESFH
CQHPPCRMSIAELDPSIAVGFFCNTEADFNDWCQQIKKLSLVRGALPMFELVERQPSHFS
NPDVLNLTPGEATQGRRAEDSSDADRLERFFDSEDEDFEILSL
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggacgcagctactcttacctacgacaccctcaggtttgagtatgaagacttccctgag
accaaagaacctgtttggatccttggccggaaatacagtgtttttacagagaaggaagag
atcctgttggatgtgacctctcggctttggttcacctacagaaagaacttccctgctatt
ggaggaactggtcccacctctgacacgggctggggctgcatgctgcgctgtggccagatg
atctttgctcaggccttggtctgcaggcatttgggaagagactggaggtggataaaaggg
aagaggcagatggataattacttcaatgttcttaatgccttcattgacaaaaaagacagc
tactactccattcaccagatagcccagatgggagtcggggagggaaaatccataggccag
tggtacggaccaaacacggtggcacaggtgctcaaaaaacttgcaacctttgatgcgtgg
agttccctggcagtacacatagcaatggacaacacagtggtgatggaagaaatccggagg
ctgtgccagtccaatgtgccatgtgctggagctgcagcatgccctgccctggagtcagat
gtgctctacaatgggtgcccagaggacgtggggctcagagagaggctcgccctgtggaaa
ccactggtgctgctgatacccctccgcctcgggctcacagagatcaatgaagcctatatt
gaaacactaaagcactgcttcatgatgccccagtccctgggagtgatcggagggaagcca
aacagtgctcactacttcattggctatgtaggtgaggagctgatttacctggacccccac
accacgcagccggtggtggagcccggtgacagcggctgcctccccgacgagagcttccac
tgccagcaccctccgtgcaggatgagcatcgctgagctcgacccctccattgccgtgggc
tttttctgcaacacagaggcagactttaatgactggtgccagcaaatcaaaaagctgtcc
ctggtcagaggagcactgcccatgttcgagctggtggaacgccagccctcacacttctcc
aaccctgacgtcctgaatctcacaccaggtgaggccacacagggaaggagagctgaggac
tcctctgatgccgacagattggaaaggttctttgactcggaagatgaagactttgaaatc
ctgtccctttga
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