Lonchura striata (white-rumped munia): 110478667
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Entry
110478667 CDS
T05897
Symbol
SPAST
Name
(RefSeq) spastin isoform X1
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110478667 (SPAST)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
lsr04812
]
110478667 (SPAST)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
110478667 (SPAST)
Membrane trafficking [BR:
lsr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
110478667 (SPAST)
Cytoskeleton proteins [BR:
lsr04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
110478667 (SPAST)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
RuvB_N
Vps4_C
AAA_22
AAA_5
TIP49
Mg_chelatase
AAA_16
AAA_14
MIT
IstB_IS21
AAA_24
DUF815
NPHP3_N
nSTAND3
AAA_2
Motif
Other DBs
NCBI-GeneID:
110478667
NCBI-ProteinID:
XP_021401132
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All DBs
Position
3:33423081..33461657
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AA seq
612 aa
AA seq
DB search
MNSPGGRGKKKGSAGSSSAPPTAGASPSSPPRPAPPVPPAGAAAAASLHKRNLYYFSYPL
FAAFALLRFVAFQLGLLFAWLCERLSRGALMAAKGSRAGAGDAPEPGGAPETVRACHKRA
FECISMALRIDEDETAGQKEQAVEWYKKGIEELEKGIAVLVIGQGDQCERARRLQSKMMT
NLAMAKDRLQLLEKLQAVLQISKPQMEIYNDSTNLACRNGHLQSESGAVPKKKDPLTHTS
NSLPRSKTVAKTGSTGLSGHHRTPSYSGISSSVSRLAPNPTPSAHKAAPKNSRTNKPSTP
TTAPRKKKDPKIFRNVDSSLANLILNEVVDSGPAVKFDDIAGQELAKQALQEIVILPSLR
PELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVR
ALFAVARELQPSIIFIDEVDSLLCERREGEHDASRRLKTEFLIEFDGVQSSGEDRILVMG
ATNRPQELDDAVLRRFTKRVYVSLPNEETRLILLKNLLSKQGSPLTQKELTQLARMTDGY
SGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIKLSDFTESLKKIKRSLSPQTLEAY
IRWNKDFGDTTV
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atgaattctccgggcggccgagggaagaagaagggctcagccggctccagttccgcgcct
ccgaccgccggcgcctctccctcctcgccgcccaggccggcgccccccgtgccgccggca
ggggcggcggcggcggcgtccctgcacaagcggaacctgtactatttctcgtacccgctc
ttcgccgccttcgccctgctccgcttcgtcgccttccagctcgggctgctcttcgcctgg
ctctgcgagcgcctctcccgcggcgcgctcatggccgccaagggcagcagggccggggcc
ggcgacgcgcccgagcccggcggggcgcccgagacggtgcgggcgtgccacaagcgggcc
ttcgagtgcatctccatggctctgcgcatcgacgaggacgagacagcaggacaaaaggaa
caagctgttgaatggtataagaaaggaattgaagaactggaaaaaggaatagctgtctta
gtaattggtcaaggtgatcagtgtgaacgggctcgacgtctccaatctaaaatgatgaca
aatttggcaatggccaaggatcggttgcagcttttagagaagctgcaggcagttttgcaa
atttccaagccgcaaatggagatctataatgacagtactaacctggcatgccgcaatgga
catctccagtcagaaagtggagcagttccaaaaaagaaggatcccttaacacacacgagt
aattcccttcctcgttcaaagactgttgcaaaaactggatccacaggcctttcaggtcac
cacagaactcccagctacagtgggatatcatcatctgtgtctagactagcgcctaatcct
acaccttcagctcacaaggctgctcctaaaaacagtagaacaaacaagccttctactcct
accactgctcctcgaaaaaagaaagacccaaagatatttagaaatgtggacagcagtctt
gctaatcttatcctaaatgaagttgttgatagtgggccagctgtcaaatttgatgatatc
gcagggcaggaactggctaaacaagctttgcaagaaattgttatccttccttctcttaga
cctgagttatttacaggtctgagagctcctgcacgtggtttattgctgtttggcccacca
ggaaacgggaagacaatgttggccaaagcagttgctgcagaatcaaacgctactttcttt
aacatcagtgcagcaagtctgacttcaaaatatgtgggtgaaggggagaaactggtgcgt
gctctatttgcagtagctagagaacttcaaccttctataatttttattgatgaagttgat
agccttttgtgtgaaagacgagaaggtgaacatgatgctagcaggcgtctaaaaacagag
tttttaatagaatttgatggtgtgcagtcttctggagaggacagaatacttgtgatggga
gcaacaaacaggcctcaggagcttgatgatgctgttctcagacggttcaccaaacgggtg
tatgtgtctttaccaaatgaggaaacaagattgattttgctcaaaaatcttctaagcaag
caaggaagtccattaacccaaaaagagttgactcaactagctaggatgacagatggatac
tctggaagtgacctaactgcattagcgaaggatgcagcacttggccccattcgagaatta
aaaccagaacaggtgaagaacatgtctgccagtgagatgagaaatatcaagctgtcggac
ttcacagaatctttgaagaagatcaagcgcagtttgagtccacagaccctggaagcatat
attcgctggaacaaggactttggagataccacagtgtga
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