KEGG   Lonchura striata (white-rumped munia): 110478968
Entry
110478968         CDS       T05897                                 
Symbol
COP1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr04115  p53 signaling pathway
lsr04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    110478968 (COP1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    110478968 (COP1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:lsr04121]
    110478968 (COP1)
Enzymes [BR:lsr01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110478968 (COP1)
Ubiquitin system [BR:lsr04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110478968 (COP1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     110478968 (COP1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 zf-C3HC4_2 Beta-prop_EIPR1 WDR55 Beta-prop_RIG_2nd EIF3I Beta-prop_WDR19_1st Beta-prop_TEP1_C zf-C3HC4 zf-RING_2 zf-RING_UBOX Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 zf-C3HC4_3 zf-RING_5 Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 WD40_RFWD3 RING_XB3-XBAT31 Beta-prop_WDR35_TULP_N Beta-prop_Vps41 WD40_like Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_IFT122_1st zf-rbx1 zf-RING_10 zf_C2H2_10 zf-RING_11 Sina_RING
Other DBs
NCBI-GeneID: 110478968
NCBI-ProteinID: XP_021401645
LinkDB
Position
8:4214427..4339035
AA seq 708 aa
MSGSRPPHPAVPPAATPASSSSSSSSSSSSSSSSSAAMAPGSSSSGGAAARPVLVAAAVS
GSGAGLARLAAGPARPGGSSAAPGAGGRKRPLLTPLCNGLINSYEDKSNDFVCPICFDMI
EEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRSEEK
RLKLDHSVSSTNGHRWQIIQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQI
LMEFLKVARRNKREQLEQIQKELSVLEEDIKRVEEMSGLYSPVSEDSTVPQFEAPSPSHS
SIIDSTEYSQPPGFSGSSQTKKQPWYNSTLASRRKRLTAHFEDLEQCYFSTRMTRVSDDS
RTTSQLDEFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTK
KIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTG
QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKF
SPSSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVSGEEIVSASTDSQLK
LWNVGKPHCLRSFKGHINEKNFVGLASNGDYIACGSENNSLYLYYKGLSKTLLTFKFDTV
KSVLDKDRKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2127 nt   +upstreamnt  +downstreamnt
atgtcgggcagccgcccgccgcaccccgccgtgccgcccgccgccacaccggcctcctct
tcctcctcctcctcatcctcctcgtcctcctcctcctcctcctcggcggccatggccccc
ggctcgtcctcctcgggcggcgcggcggcgcggcccgtgctggtggcggccgccgtgtcg
gggtcgggcgcggggctggcgcggctggcggcggggccggcgcggcccggcggctcctcc
gcggcgccgggggccggcggcaggaagaggccgctgctcaccccgctctgcaacgggctc
attaactcctacgaggacaagagcaacgacttcgtgtgccccatctgttttgatatgatt
gaagaagcctacatgacaaaatgtggacacagcttctgctataaatgtattcaccagagc
ctggaggacaataacagatgtcccaaatgcaactatgttgtggacaacatagatcatctt
tatcccaacttcttagttaatgaattaattcttaaacagaagcaacgatctgaggagaaa
agactcaaactggaccattcagtgagtagcaccaacggccacagatggcagataattcaa
gatttgttgggaactgatcaagacaatcttgacttagccaatgtcaacctgatgctggag
ctgctggtgcaaaagaagaagcaattggaagcagagtcccatgctgcccaattgcagatc
cttatggaattccttaaagtcgccaggaggaacaaacgagagcaattggagcagatccag
aaggagctaagtgttctggaagaagatattaaacgtgtagaggagatgagtggcctgtac
tccccagtcagtgaggacagcacagtgccacagtttgaggctccctcaccttcacacagt
agtattattgactccaccgagtacagccagcctccaggcttcagtggcagttctcagacc
aaaaagcagccgtggtataacagcacactggcctcgcgacgcaagcgcctcacagctcac
tttgaggacctagagcagtgctatttttccaccaggatgactcgtgtctcggatgacagc
agaaccaccagccagctggatgagtttcaggagtgtctatccaaattcacgcgctacaat
tccgtgcgaccgctggcaacgctgtcctacgccagtgacctctacaatggctccagcata
gtttccagtattgagtttgaccgagactgtgactactttgccatcgctggagtgacaaag
aagattaaagtctatgagtatggtacagtcattcaggatgcagtggatattcactaccct
gagaatgaaatgacctgtaattccaaaatcagctgtatcagctggagtagttaccacaag
aacctgctagccagcagtgactatgaaggcaccgtcatcctttgggatggattcacagga
cagagatccaaggtctaccaggagcatgaaaaaaggtgctggagtgttgactttaacttg
atggaccctaagttattggcttcaggctctgatgatgccaaagtgaaactgtggtctacc
aacttggacaactcagttgcaagcattgaggccaaggctaatgtgtgttgtgtcaaattc
agcccatcttctaggtatcacctagcttttggctgtgcagatcactgtgttcactactac
gacctgcgcaacactaagcagcccatcatggtgttcaaggggcaccgcaaggcagtctcc
tatgcaaagtttgtcagcggcgaagaaatcgtctctgcgtcaacagacagtcagctgaag
ctgtggaatgtggggaaacctcactgcctgcgctccttcaagggtcacatcaacgagaaa
aactttgtggggcttgcgtccaacggagactacattgcctgtggaagtgaaaataattcc
ctttacttatactataagggcctctcaaagacactgctgacattcaagtttgatacagtc
aaaagtgtcctggacaaggaccggaaagaggatgacacaaatgagtttgtgagcgccgta
tgctggagggcacttccagatggggagtccaacgtgcttattgctgctaacagtcagggt
acaattaaggtactggagctggtatga

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