Lonchura striata domestica (Bengalese finch): 110479108
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Entry
110479108 CDS
T05897
Symbol
USP9X
Name
(RefSeq) probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform X1
KO
K11840
ubiquitin carboxyl-terminal hydrolase 9/24 [EC:
3.4.19.12
]
Organism
lsr
Lonchura striata domestica (Bengalese finch)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
lsr01002
]
110479108 (USP9X)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110479108 (USP9X)
Enzymes [BR:
lsr01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
110479108 (USP9X)
Peptidases and inhibitors [BR:
lsr01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
110479108 (USP9X)
Ubiquitin system [BR:
lsr04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
110479108 (USP9X)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3517
UCH
UCH_1
FAST_1
Vps23_core
Motif
Other DBs
NCBI-GeneID:
110479108
NCBI-ProteinID:
XP_021401828
LinkDB
All DBs
Position
1:complement(7846444..7942883)
Genome browser
AA seq
2552 aa
AA seq
DB search
MTATTRGSPVGGNDSQGQAPDGQSQPPLQQNQTSSPDSSNENSPATPPDEQGQADAPPQL
EDEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFF
RDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMALNP
HCKFHLYNGTRPSETVPAGVQLAEDELYARPPDPRSPKGWLVDLINKFGTLNGFQVLHDR
FMSGSALNVQIIAALIKPFGQCFEFLTLHTVKKYFLPIIEMVPQFLENLTDDELKKEAKN
EAKNDALSMIIKSLKNLASRVPGQEETVKNLEIFRLKMILRLLQISSFNGKMNALNEVNK
VISSVSYYTHRHGNPEEEEWLTAERMAEWIQQNNILSIVLRDSLHQPQYVEKLEKILRFV
IKEKALTLQDLDNIWAAQAGKHEAIVKNVHDLLAKLAWDFSPEQLDHLFDCFKASWTNAS
KKQREKLLELIRRLAEDDKDGVMAHKVLNLLWNLAHSDDVPVDIMDQALSAHIKILDYSC
SQDRDTQKIQWIDRFIEELRTNDKWVIPALKQIREICSLFGEAPQNLSQTQRSPHVFYRH
DLINQLQHNHALVTLVAENLSAYMESMRQYAKEHGEYDPQTVRPGSRYSHVQEVQERLNF
LRFLLKDGQLWLCAPQAKQIWKCLAENAVYLCDREACFKWYSKLMGDEPDLDPDINKDFF
ENNVLQLDPSLLTENGMKCFERFFKAVNCREGKLVAKRRAYMMDDLELIGLDYLWRVVIQ
GNDDIANRAIDLLKEIYTNLGPRLQVNQVVIHEDFIQSCFDRLKASYDTLCVLDGDKDSI
NCARQEAIRMVRVLTVLREYINECDSDYHEERTILPMSRAFRGKHITLVVRFPNQGRQVE
DLDIWSHTNDTIGQVRRCILNRIKANSAHTKVELFIGGELVDPADDRKLIGQLNLKDKTL
ITAKLTQINSNMPSSPDSSSDSSTGSPGNHGNHYSDGPNPEVESCLPGVIMSLHPRYISF
LWQVADLGSSLNMPPLRDGARVLMKLMPPDNTTVEKLRAICLDHAKLGESSLSPSLDSLF
FGPSASQVLYLTEVVYALLMPASAPLGEDASDFQYNFLKSGGLPLVLSMLTRNNFLPNAD
METRRGAYLNALKIAKLLLTAIGYGHVRAVAEACQPVVEGTSTISPINQATHDQAVVLQN
ALQNIPNPTSECMLRNVAIRLAQQISDEASKYIPDICVIRAVQKIVWASGCGSVQLVFSS
NEEISKIYEKTNAGNEPDMEDEQVCCEALEVMTLCFALIPTALDALSKEKAWQTFIIDLL
LHCHSKTVRQMAQEQFFLMATRCCMGQRPLLFFITLLFTVLGSTARERAKHSGDYFTLLR
HLLNYAYNSNINVPNAEVLLNNEIDWLKRIRDEVKRTGETGVEETILEGHLGVTKELLAF
QTPEKKYHIGCEKGGANLIKELIDDFIFPASNVYLQYMRNGELPAEQAIPVCSSPATINA
GFELLVALAVGCVRNLKQIVDTLTEMYYIGTAITTCEALTEWEYLPPVGPRPPKGFVGLK
NAGATCYMNSVIQQLYMIPAIRNGILAIEGTGSDVDDDMSGDEKQDNESNVDPRDDVFGY
PHQYEDKPALSKTEDRKEYNIGVLRHLQVIFGHLAASRLQYYVPRGFWKQFRLWGEPVNL
REQHDALEFFNSLVDSLDEALKALGHPAMLSKVLGGSFADQKICQGCPHRYECEESFTTL
NVDIRNHQNLLDSLEQYVKGDLLEGANAYHCEKCNKKVDTVKRLLIKKLPPVLAIQLKRF
DYDWERECAIKFNDYFEFPRELDMEPYTVAGVAKLEGDDVNPENQIIQNEQSENEHSGST
KYRLVGVLVHSGQASGGHYYSYIIQRNGGDGEKNRWYKFDDGDVTECKMDDDEEMKNQCF
GGEYMGEVFDHMMKRMSYRRQKRWWNAYILFYERMDTIDKDNELIKYISEIAITTKPHQI
KMPSAIERSVRKQNVQFMHNRMQYSLEYFQFIKKLLTCNSVYLNPPPGQDHLLPEAEEIT
MISIQLAARFLFTTGFHTKKIVRGPASDWYDALCILLRHSKNVRFWFAHNVLFNVSNRFS
EYLLECPSAEVRGAFAKLIVFIAHFSLQDGPCQSPFASPGPSSQAYDNLSLSDHLLRAVL
NLLRREVSEHGRHLQQYFNLFVMYANLGVAEKTQLLKLNVPATFMLVALDEGPGPPIKYQ
YAELGKLYTVVSQLIRCCNVSSRMQSSINGNPPLANPYGDPNLSQPIMALQQNVADILFV
RTSYVKKIIEDCSNSEETIKLLRFCCWENPQFSSTVLSELLWQVAYSYTYELRPYLDLLL
QILLIEDSWQTHRIHNALKGIPDDRDGLFDTIQRSKNHYQKRAYQCIKCMVALFSNCPVA
YQILQSNGDLKRKWTWAVEWLGDELERRPYTGNPQYTYNNWSPPIQSNETSNGYFLERSH
SARMTLAKACELCPEEEPDDPDAPDEHESSPPEDAPLYPHSPGSQYQQNNHVHGQPYTGP
AAHHMNNPQRTGQRAQENYEGSEEVSPPQTKD
NT seq
7659 nt
NT seq
+upstream
nt +downstream
nt
atgacagccacgactcgtggctctccagtaggagggaatgatagccagggtcaggctcct
gatggacagtcccagcctcccctccagcagaatcagacttcttcacctgattcttcaaat
gagaactccccagctaccccgcctgacgagcagggccaagctgatgctccaccccagctt
gaagatgaggagcctgcatttccacacacagacctggcaaagttggatgacatgatcaac
aggcctcgatgggttgttcctgtattgccgaagggggaattagaagttcttctagaagct
gctattgacctaagtaaaaaaggccttgatgtcaaaagtgaagcatgccagcgatttttt
cgagatgggctaacaatatccttcacaaaaatccttacagacgaggcggtgagcggctgg
aagtttgagattcatagatgtattattaacaacactcatagactagtggagctctgtgtg
gccaagctgtcccaagactggtttccccttcttgaacttcttgccatggccttaaatcct
cactgcaaattccatctatacaatggtactcgtccctcagaaacagttcctgcaggagtc
cagctcgctgaagatgaactttacgcccgtcctcctgacccacgatcaccaaagggttgg
ctagtagatcttatcaacaagtttggcacattaaatggatttcaggtcttgcatgatcga
ttcatgagtggatcagcattgaatgttcagatcattgcagctctcatcaagccatttgga
caatgttttgaatttttaacattacatacagtgaagaaatacttccttccaattatagaa
atggttccacagtttttagaaaatttaacagatgatgaactgaaaaaagaagcaaagaat
gaagccaaaaatgatgctctgtcaatgataatcaaatctctaaagaacttagcttcaaga
gttccaggacaagaagaaactgtaaaaaacttagaaatatttaggttaaaaatgattctt
aggttgttacaaatttcctctttcaatggtaaaatgaatgcactaaatgaagttaacaaa
gtaatatccagtgtgtcatactacactcatcgacatggtaatcctgaagaggaagagtgg
ctcacagctgaaagaatggcagaatggatccagcagaacaacattttatcaattgtatta
agagatagtcttcatcaacctcaatatgtagaaaaacttgagaaaattctccggtttgtc
atcaaagagaaagctctcactttgcaggatcttgacaacatttgggctgcacaggcagga
aaacatgaagccattgtaaaaaatgtacatgatctcctcgcaaaattagcttgggatttc
tctcctgaacagcttgatcacctgtttgattgttttaaggcaagttggacaaatgcaagc
aagaaacagcgtgagaaactgctggagttaattcgtcgccttgcagaggatgacaaggat
ggtgtgatggcacacaaagtgctgaaccttttgtggaatttggctcacagtgatgatgtg
ccagttgatatcatggaccaggctcttagtgcccatataaaaatcttagattacagctgt
tcacaggatcgagatacacaaaagatccagtggatagatcgttttatagaagaacttcgc
acaaatgacaaatgggtcattcctgcactgaaacaaattagagaaatttgcagtttgttt
ggtgaagcaccacagaacttgagtcaaactcagcgaagtccccatgtgttttaccgacat
gacttaatcaatcaacttcagcacaatcacgccctcgttacactggttgcagaaaacctc
tctgcctatatggaaagcatgaggcagtatgctaaagagcatggtgagtatgatcctcag
actgtgagaccaggaagccgatacagtcatgtgcaggaagtacaggagcgactgaacttc
ttacgatttttattgaaggatggtcagctgtggctctgtgcccctcaggcgaagcaaata
tggaagtgtttagctgaaaatgcggtttatctttgtgatcgcgaagcctgttttaaatgg
tattccaaactaatgggggatgaaccagacttagaccctgacattaataaggacttcttt
gaaaataatgtgcttcagctggatccttccctattaacagaaaatggaatgaaatgtttt
gaacgtttcttcaaagctgtgaactgtcgagaaggaaagctagtagcaaagagacgagcc
tatatgatggatgacctggaattaataggattagactacctttggagggttgtgattcag
ggaaatgatgacattgcaaaccgagcaatagaccttcttaaagagatctatactaatctt
ggcccgaggttacaagttaatcaggtagtgattcatgaagacttcattcagtcctgtttc
gatcgtctaaaagcctcctatgatacattgtgtgtgttggatggagataaagacagtatc
aactgtgcaagacaagaagcaataaggatggtgagagtgttgactgttttaagggagtat
ataaatgaatgtgacagtgattaccacgaagagagaactattctacctatgtcaagagct
ttccgtggtaaacatatcacacttgtagttcgtttcccaaaccaaggccggcaggtggaa
gatttggatatttggtctcacacaaacgacacgattggccaagtgcggcgttgcatcctc
aatcgcattaaagccaacagtgcacacacaaaagtagagctgtttattgggggtgagctg
gtagatcctgcagatgacagaaaattaattgggcagctgaatctcaaagataaaacgcta
attacagctaagcttacacagataaattctaatatgccctcaagtccagatagttcttct
gattcttcaactggttctccgggcaaccatggcaatcactacagtgatggtccaaatcca
gaagttgaaagctgtttgcctggagtgatcatgtcactgcatcctcgatacatctccttt
ctttggcaagttgcagacttgggcagtagtctaaatatgccacctcttagagatggagct
cgtgttcttatgaagctcatgccaccagataatactacggtcgagaaactaagagcaatt
tgtttagatcatgcaaagcttggagaaagtagccttagtccatcccttgattctctgttc
tttggtccttctgcctcacaagtgctgtacctaacagaggtggtttatgccttgttaatg
cctgccagtgcacctctgggagaagatgccagtgacttccagtacaacttcctgaaaagt
ggtggtttgcctcttgtgctgagcatgctgaccagaaataacttcctgccaaatgcagat
atggaaactcgaaggggtgcctaccttaatgctctaaaaatagccaaattattgctaaca
gcaattggttatggccatgttcgagctgtggcagaagcttgtcagccagttgtggaaggc
acaagtacaatttcaccgataaaccaggctacgcatgaccaggcagtggtgctacaaaat
gccctacaaaacattcctaatccaacttcagaatgcatgctgagaaatgtagcaatacgt
cttgcacagcaaatatctgatgaggcttcaaaatacatccctgacatctgtgttatcagg
gccgtacaaaaaatcgtttgggcatcaggttgtggatcggttcagcttgttttcagctca
aatgaggaaattagtaaaatctatgaaaagacaaatgcaggaaatgaaccagacatggaa
gatgagcaagtttgctgtgaagctctggaggtgatgaccctgtgctttgctttgattcca
acggcactggatgcactcagcaaagagaaggcgtggcagacatttattattgatttacta
ttgcactgtcacagcaaaactgttcgtcagatggcacaggagcaattctttttaatggct
accaggtgttgcatgggacagagacctctccttttcttcattaccctgctgtttactgtt
ctagggagcactgcaagagagagagctaagcattctggagactacttcacccttttaaga
catcttcttaactatgcttacaacagtaatattaatgtacccaatgctgaagttcttctc
aataatgaaattgactggcttaagagaatcagggatgaagtaaaaagaacaggagaaaca
ggtgtcgaagaaacgatcttagagggtcaccttggagtaacaaaagagttgttagcattc
cagacacctgagaagaaataccatattggttgtgaaaaaggaggtgctaatctcattaaa
gagttgatagatgatttcatctttccagcatccaatgtttatctacaatacatgagaaat
ggagaattgcctgctgagcaggccataccagtctgtagttcaccagctactattaatgct
ggctttgagctccttgttgcacttgcagttggatgtgtgcgaaatctcaaacagatagta
gacacattgactgaaatgtattacataggtacagcaatcactacttgtgaagcgctcaca
gaatgggaatatctgccacctgttgggcctcggccaccaaagggatttgtgggactgaaa
aatgctggtgccacttgttacatgaattctgtcattcagcagctgtacatgattccagcc
atcaggaatgggattcttgcaatagaaggcacaggcagtgatgtagatgatgacatgtct
ggggatgaaaagcaggacaatgagagcaatgttgacccacgagatgatgtctttggttat
ccacatcagtatgaagataaaccagcactgagcaaaactgaagatagaaaagaatacaat
attggagttttgaggcatctccaagtaatttttggccatttagcagcttccaggctacag
tactatgtaccaagagggttttggaaacagttcagactctggggtgaacctgtaaatcta
cgtgaacaacacgatgctttagaattttttaattcgttggtggacagtttagatgaagct
ttaaaagctttgggccatccagcaatgttaagtaaagttttaggagggtcctttgctgat
cagaagatttgtcaaggatgcccgcatcggtacgagtgtgaggaatccttcacaactctg
aatgtagatataaggaatcaccaaaaccttcttgattctttggagcagtatgttaaagga
gatttattggaaggtgcaaatgcatatcattgtgaaaaatgcaacaaaaaggtggataca
gtgaagcgcttgttgattaagaagttgcctccagttcttgcaatccagttgaaacgattt
gattatgactgggaaagggaatgtgcaatcaaattcaatgattattttgaatttccacga
gaactggacatggagccttacacagtggcaggtgtagcaaaattggaaggggatgatgtg
aatcctgaaaatcagataatacagaatgagcagtcggaaaatgaacactctgggagcaca
aaatacagacttgtgggtgtacttgtgcacagtggccaggccagcggtggacattactac
tcctacattatccagaggaatggtggagatggtgagaagaaccggtggtacaaatttgat
gatggagatgtgacagagtgtaaaatggatgacgacgaagagatgaaaaatcagtgtttt
gggggcgagtacatgggcgaagtgtttgatcacatgatgaagcgaatgtcctacaggcgc
cagaagaggtggtggaatgcttacattcttttttacgaacgcatggacacgatagacaag
gacaatgaactaataaaatatatttcagaaatcgctatcaccactaaaccccaccagatt
aaaatgccctcagccatcgagcgaagcgtgcgcaagcagaacgtgcagttcatgcacaat
cggatgcagtacagcctggaatatttccagttcataaagaagttgcttacttgtaatagt
gtctacctaaaccctcctccaggacaagatcatctgttgcctgaagcagaagaaataact
atgattagtattcagcttgctgctagatttctcttcaccacaggatttcatacaaagaaa
atagtccgtggccctgctagtgattggtatgatgccctgtgcatcctgctccgtcacagc
aagaatgttcgcttttggtttgcacacaatgtcctttttaacgtttcaaaccgcttctct
gagtatctcctggaatgccccagtgcagaagtgaggggtgcatttgcaaaacttatagta
tttattgcacatttttcattgcaagacggaccatgtcaatcaccttttgcctctcctgga
ccttccagtcaggcttatgataacttaagtttaagtgatcacttactgagggcggtactg
aatcttctaagaagggaggtatccgaacacgggcgccacttgcagcagtatttcaatctg
tttgttatgtatgccaatctaggtgtagcagagaagacacagcttctgaaactaaatgtt
cctgcaaccttcatgctcgtggctctggatgaaggtccaggccctccaattaagtaccag
tatgctgagctggggaagctgtacactgtggtgtcgcagctgatccgctgctgcaacgtc
tcatcacggatgcagtcttctatcaatggtaatcctccacttgccaacccttatggtgat
cctaatttatctcagcctataatggcacttcagcagaacgtagcagacattctgtttgtg
agaactagttatgtaaagaaaattattgaagactgcagtaattctgaagagaccatcaag
ttgcttcgtttctgctgttgggagaatcctcagttctcttccacagtcctcagtgaacta
ctttggcaggttgcatattcatatacatatgagcttcgtccttatttggatctgcttctg
caaatcctgttaattgaggactcttggcaaactcacaggattcacaatgcacttaaggga
atcccagatgacagggatggactctttgacaccattcagcgctcaaagaatcattaccag
aaaagagcttaccagtgtataaagtgcatggtagctctcttcagcaactgccctgtagct
taccagatccttcagagcaatggagatttgaagaggaaatggacctgggcagtggaatgg
cttggagacgagctggagcgtagaccatacactggcaatccccaatacacctacaataat
tggtctccaccaatacagagcaatgaaacatcaaatggctacttcctagagagatcacac
agtgctagaatgactcttgcaaaggcttgtgaactctgcccagaggaggaaccagatgat
cctgatgccccagatgaacatgagtcttctccacctgaagatgccccactgtatccccat
tcacctggttcccagtatcaacagaataaccacgtgcatggacagccatatacgggcccg
gcagcacatcatatgaacaaccctcagcgaactggccaacgagcacaagaaaactacgaa
ggcagtgaagaagtttccccgcctcagacaaaagattag
DBGET
integrated database retrieval system
