Lonchura striata (white-rumped munia): 110479134
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Entry
110479134 CDS
T05897
Symbol
LSM5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03018
RNA degradation
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110479134 (LSM5)
09123 Folding, sorting and degradation
03018 RNA degradation
110479134 (LSM5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110479134 (LSM5)
03041 Spliceosome [BR:
lsr03041
]
110479134 (LSM5)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110479134 (LSM5)
mRNA degradation factors
5'-3' decay
Lsm complex
110479134 (LSM5)
Spliceosome [BR:
lsr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
110479134 (LSM5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM14
Motif
Other DBs
NCBI-GeneID:
110479134
NCBI-ProteinID:
XP_021401859
UniProt:
A0A218V549
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Position
Z:complement(18480566..18485112)
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AA seq
91 aa
AA seq
DB search
MAASAVSNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLVPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgagcgcggtgtccaacccgtcccagctcctgccgctcgaacttgtggacaag
tgcatcggttcacgcattcacatcgtgatgaaaagcgacaaagaaatagttgggacactt
ctaggatttgatgactttgtcaatatggtgctagaagatgttacagaatttgagatcaca
cctgagggcagaagaatcacaaagctggaccagattctgctcaatggaaataacataact
atgctggttcctggaggagaaggacctgaagtatga
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