Lonchura striata (white-rumped munia): 110479158
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Entry
110479158 CDS
T05897
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110479158 (CHD1)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110479158 (CHD1)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110479158 (CHD1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
110479158 (CHD1)
SLIK complex
110479158 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
CHD1-like_C
Helicase_C
Chromo
DEAD
DUF7855_C
Motif
Other DBs
NCBI-GeneID:
110479158
NCBI-ProteinID:
XP_021401899
UniProt:
A0A218V4T5
LinkDB
All DBs
Position
Z:complement(23091289..23146240)
Genome browser
AA seq
1802 aa
AA seq
DB search
MNGHSDEESVGNSSGESSRSDDDSGSASASGSGSSSGSSSDGSSSQSGSSDSDCGSESGT
QSESESDASREKKQIQSKPPKVDGSEFWKSSPSILAVQRSAVLKKQQQQKAASSDSVSEE
DSSSSEDSADDSSSETKKKKTHKDEDWQMSGSGSMSGTGSDSESEEDREKSSCEENESDY
EPKNKVKSRKPPIRIKPKSGKKSAGPKKRQLDSSEDEEEEDDDYDKRGSRRQATVNISYK
EAEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGAATTIYAVEADGDP
NAEFEKSKEPAEVQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWL
KNASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSW
EDGALIAKKFQARIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHESLELRD
YQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLT
SWQREIQTWAPQMNAVVYLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFL
GGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPE
KFSSWEDFEEEHGKGREYGYASLHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK
QYYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHL
IRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELR
KQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQ
KKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQRMDTTGKTVLHTGSTPSSSTPFNKE
ELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVAN
FSNMDEDDIELEPERNSRNWEEIIPEVQRRRIEEEERQKELEEIYMLPRMRNCAKQISFN
GSEGRRSRSRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGG
PLERLDAVARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFR
ISGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYVIPCHTKAAHFDIDWGKEDDSNLLI
GIYEYGYGSWEMIKMDPDLSLTQKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQ
RLAGAGNSKRRKMRTKKNKVLKAAKLKEEIKSDSSPQPSEKSDEDDDENNKDEIVSVKHL
HKKFKAEKENEEKPEPDTGIKKEAEEKRETKEKENKRDLKREKKEKEDKKELKEKRENKV
KESTQKEKEVKEEKVNEIKSENKEKTKKIPLLDTPVHITASSEPIPILEESEELDQKTFS
VCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWR
KNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSHVNTHVIRNPDVERLKEN
TNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKNDSRKRPYSAFSNGKDHRDWDHYKQ
DRYYSDSKHRKLDDYRNRDHRSSLEGSLKDSRVHLDHRSHSDHRIHSDHRSSSEYSHHKS
PRDYRYHSDWQMDHRASGSGPRSPLDQRSPYGSRSPLGHRSPFEHSSDHKSTPEHTWSSR
KT
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcatagtgatgaagaaagtgtaggaaacagtagtggagagtcaagccgatca
gatgatgattctgggtcagcatcagcttctggatctggttcaagctctggaagcagtagt
gacggaagcagcagccagtcaggcagcagtgactctgactgtggttcagagtcaggcact
caatcagaatcagagtctgatgcatctagagagaagaaacaaattcagtctaaaccacca
aaagttgacggatctgagttttggaagtctagtccaagtatacttgctgtgcaaagatca
gcagtgctcaagaagcagcaacaacaaaaggcagcctcatcagacagtgtttcagaagag
gactcttcaagtagtgaagattcagcagatgactcatccagtgaaaccaagaagaagaaa
acacataaagatgaagactggcaaatgtcaggatcaggatcaatgtcgggaacaggttca
gattccgaatcagaggaagacagggagaaaagcagctgtgaagagaatgaatctgactat
gagccaaaaaacaaggtcaaaagccggaaacctccaatcagaattaagccaaaaagtggg
aaaaagagtgcaggaccaaaaaagaggcagcttgattcttcagaggatgaggaggaagag
gatgatgattatgataagaggggatctcgtcgccaggcaacagtcaacattagttacaaa
gaagctgaagaaaccaagacagattctgatgatttgctagaagtttgtggagaagatgtt
ccacaacctgaagaagatgaatttgaaactatagagaaatttatggatagtcgagttggc
cgtaaaggagccacaggtgctgcaaccacaatatatgcagttgaggcagatggtgaccca
aatgctgagtttgaaaaatcaaaggagccggcagaagtacagtatcttattaaatggaaa
ggttggtcacacattcataacacttgggaaactgaagaaacactgaagcaacaaaatgtt
aaaggaatgaagaaactggacaattataagaaaaaggatcaggaaacaaaacgatggctg
aaaaatgcttctccagaagatgtggaatattacaactgccagcaggagcttacagatgat
ctacataaacaataccagatagtggaaagaataattgctcattcaaatcagaaatcagct
gctggttatccagactactattgtaagtggcaaggtctgccttattctgaatgtagttgg
gaagatggagctctcattgccaaaaagtttcaggcacgcattgatgagtacttcagcaga
aatcaatccaagaccactccctttaaagactgcaaggttctgaaacaaaggccacggttt
gttgcactaaaaaaacaaccatcttacattggaggacatgaaagtttagagttaagagat
tatcagttaaatgggttgaattggcttgctcactcatggtgcaaagggaatagctgtatt
cttgcagatgaaatgggtctgggtaaaacaatacaaacaatttcttttctgaactatctg
tttcacgagcatcagttgtatgggcctttcttgttggttgtgccactttctaccttgaca
tcttggcaaagagaaattcaaacctgggctcctcagatgaatgctgtagtttacttagga
gacataactagtagaaatatgataagaactcatgaatggatgcatccacagaccaaacga
ttgaaatttaacatactattaacaacatatgaaattttgctaaaggacaagtcattcctt
ggtggtctgaattgggcatttataggagttgacgaagctcatcgtttaaaaaatgatgac
tctcttctgtacaaaactttaatagacttcaagtctaaccatcgtcttcttattactgga
acccctctgcaaaactctctcaaagagctttggtctttactccacttcatcatgccagaa
aagttttcttcatgggaagattttgaagaggagcatggcaaagggagagagtatggttat
gcaagtcttcacaaagaacttgaaccatttctattgagaagagttaaaaaagatgtagaa
aagtctttacctgctaaagttgagcaaattctgaggatggaaatgagtgcattgcagaag
caatactataagtggattttaaccaggaattataaagcccttagcaaaggttcaaaaggc
agtacttccggctttttgaacatcatgatggaactcaagaagtgttgcaaccattgctac
ctcattaaaccaccagatgataatgaattctataataaacaggaggccttacagcattta
atacgtagcagtggaaaactaatccttcttgacaagctactgattcgtctgcgagaacgt
ggcaacagagtcctgattttctcacagatggtaaggatgctggacatcctggcagaatat
ctgaaatatcgtcagtttccgtttcagagacttgatggatcaataaaaggggaattgagg
aaacaagcactggatcattttaatgcagaaggatcagaggacttctgctttttactgtct
accagagctggaggattaggtatcaacctggcatctgctgatacggtggttatatttgat
tctgactggaatccacagaatgatctgcaagcacaggctagagcacatagaattggacag
aagaaacaggttaatatttatcgattagtcacaaaaggatcggtggaagaagatattctt
gaacgagccaaaaaaaagatggtgttagatcacttagtaattcagagaatggacactaca
gggaaaactgtgttacatacaggctctactccttcaagctcaacaccttttaataaggag
gagttgtcggcaattttgaagtttggtgctgaggaactttttaaagagcctgaaggggaa
gaacaggagcctcaagaaatggatatagatgaaatattgaagagagctgaaactcgggaa
aatgagccaggtccattaactgtaggagatgagttgctttcgcagttcaaggtggccaac
ttctccaatatggatgaagatgatattgaactggaaccagaaagaaattcaagaaattgg
gaagaaatcattccagaggtccagaggcgaagaatagaagaggaggaaagacaaaaagaa
cttgaagaaatatacatgcttccaagaatgagaaactgtgcaaaacagattagcttcaat
ggcagtgaagggagacgcagtaggagtagaagatattctggatctgatagtgactccatc
tcagaaagaaaaaggccaaaaaaacgcggaagaccacgaactattcctcgagaaaatatt
aaaggatttagtgatgcagagataaggcggtttatcaagagttacaagaaatttggtggc
cctcttgagaggttagatgctgtagctagagatgctgagctagttgataaatcagagaca
gatctcagacgtttgggagagcttgtgcataatggatgcattaaagccttaaaggacaat
tcatctggacaagaaagagcaggaggtagacttgggaaggttaaaggcccaacattccga
atctcaggagtgcaagttaatgcaaagttagtcatctctcatgaagaagagttggcacca
ttgcacaaatccattccttcagatccagaagaaaggaaaagatatgtcatcccatgccac
actaaggcagctcattttgatatagattggggtaaggaagatgattccaatttgttgata
ggcatctatgaatatggttatggcagctgggaaatgataaaaatggatcctgatctcagt
ttgacacagaagattttgcccgatgatccagataagaaaccccaggcaaagcagttacag
acccgtgcagactacctcattaaattactgaataaagaccttgcgaggaaggaagcacag
aggcttgctggagcaggcaattcaaagaggaggaaaatgagaactaagaagaataaggtg
ctaaaggctgcaaaattaaaagaagaaataaaaagtgattcttcaccacagccctcagaa
aaatctgatgaagatgatgatgagaataacaaggatgagattgtttcagtgaaacatctg
cataaaaaatttaaagcagaaaaagaaaatgaagaaaagcctgagccagatactggtata
aagaaggaagctgaagaaaaaagagagacaaaagaaaaggaaaataagagggatttgaaa
agggagaaaaaagaaaaagaggataagaaagaattaaaagaaaagagagaaaataaagta
aaagaatccacacagaaagaaaaagaagtaaaggaagagaaggtaaatgaaatcaaatct
gaaaataaagaaaaaactaaaaaaattccattgctggatactccagttcatattactgca
tctagtgaaccaattcctatattagaagaatctgaagagctagatcagaaaacttttagt
gtgtgcaaagaaagaatgagacctgtcaaggcagcattgaaacagcttgatcgaccagag
aagggcctttctgaaagagaacagctagaacatactagacagtgtcttatcaaaattggg
gatcatattactgaatgtctaaaggagtacacaaatcctgaacagattaaacagtggaga
aaaaatttgtggatttttgtctctaagtttacagaatttgatgccagaaagctgcacaaa
ctgtataaacatgcaatcaaaaaacgtcaagagtctcagcaacacaatgatcagaatatt
agcagtcatgtgaatacacatgtaattagaaatccagatgtggaaagactgaaggagaat
acaaaccatgatgacagtagcagggacagctattcctctgatagacatctgtcacaatac
catgatcatcataaggacagacatcagggagacgcttacaagaaaaatgactctaggaaa
aggccctattcagccttcagcaatggaaaagatcacagagactgggatcattacaaacaa
gacagatactacagtgatagtaaacataggaagttagatgactacaggaacagagaccac
aggtcaagcctggaagggagtctaaaagacagccgtgttcatttggatcaccgttcccat
tcagaccacaggatacattcagatcaccgttcctcttctgagtacagccatcataaatct
cccagagattacaggtaccactcagactggcaaatggaccacagagcttcaggtagtggt
ccaaggtcaccactagatcagaggtctccttatggttcaagatctcccctaggtcacaga
tctccatttgaacattcatcagatcacaaaagtacacctgaacatacatggagtagccgg
aaaacataa
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