KEGG   Lonchura striata (white-rumped munia): 110479369
Entry
110479369         CDS       T05897                                 
Symbol
VPS41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
lsr  Lonchura striata (white-rumped munia)
Pathway
lsr04140  Autophagy - animal
lsr04148  Efferocytosis
lsr05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:lsr00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    110479369 (VPS41)
   04148 Efferocytosis
    110479369 (VPS41)
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    110479369 (VPS41)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:lsr04131]
    110479369 (VPS41)
Membrane trafficking [BR:lsr04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    110479369 (VPS41)
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz WD40_Prp19 Beta-prop_EML_2 zf_RING_Vps8_fungal Beta-prop_HPS5 ANAPC4_WD40 Vps39_1 zf_RING_Vps8 TPR_PEP5_VPS11 WD40_WDHD1_1st Frtz Beta-prop_RIG_2nd zf-RING_5 TPR_GEMI5 Beta-prop_IFT140_2nd zf-RING_11 zf-RING_2 zf-rbx1
Other DBs
NCBI-GeneID: 110479369
NCBI-ProteinID: XP_021402315
LinkDB
Position
2:54600398..54709742
AA seq 858 aa
MEAAEPALAGRETRSYEESTDESEEDESEEEPKLKYERLSNGVTEILQKDAASCMTVHEK
FLALGTHYGKVYLLDVQGNITQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSA
EEFHETFDCPIKIVAVHPQFVRSHFKQFVTGGKKLLLYERSWMNRWKPSVLHEGEGNIRN
IKWRGHLIAWANNMGVKILDMISKQRITNVPRDDISLRPDMYPCSLCWKDNLTLIIGWGN
SVKICSVKERHASEMRDLPNRYVEIVFQFDTEFYVSGLAPLCDQLVILSYVKEISEKTEV
ECCARPRLDIVQPLPESCEEISSDALTVRGFQENECRDYHLEYSEGESLFYIISPRDVVV
AKERDQDDHIDWLLEKKKYEEALMAAEISQKTIKKHKILDIGLAYINHLVEKGEYDLAAR
KCQKILGKNTELWEFEVYKFKEIGQLKAISRYLPRRDPVLKPLIYEMVLHEFLESDYEGF
ATLIKEWPGDLYNNTIIVQAVVDHLKKDPQNRTLLQTLAELYTYDQRYGRALEIYLTLRH
KDVFQLIHKHNLFSSIRDKIVLLMDFDSEKAVDMLLDNEDKISIDRVVEELENRPELQHV
YLHKLFKRDHHKGQRYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEET
VYLLSRMGNSRSALKMIMEELQDVDKAIEFAKEQDDGELWEDLILYSIDKPPFITGLLNN
IGTHVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKKMH
RTQMKGVLVDEENICESCLSPILPSDASKSFSVVVFHCRHMFHRECLPVSNTVSSVQFCN
ICSAKHRGPGSAVLEMKK
NT seq 2577 nt   +upstreamnt  +downstreamnt
atggaggcggcggaaccggctctggccgggagggaaaccaggtcttatgaggaatcaaca
gatgaatctgaggaagatgagagtgaagaagaacctaagctcaagtatgaacggctttct
aatggagtgactgaaattctccagaaggatgcagccagctgcatgacagtgcatgaaaag
tttttggcactgggaacacattatggcaaagtttatttacttgatgtccaggggaacatc
acacagaagtttgatgttagcccagtgaagataaatcagatcagcctggatgaaagtgga
gaacacatgggtgtttgctcagaagatgggaaggtacaagtgtttggattatattcagca
gaagagtttcatgaaacgtttgactgtcctattaaaattgttgctgttcatcctcaattt
gtaagatcccacttcaagcaatttgtaacaggaggaaaaaagttgctgttatatgaaaga
agttggatgaatagatggaagccttcagttttacatgaaggggaaggaaatataagaaat
ataaaatggagagggcacttaattgcttgggctaataatatgggcgtaaagatacttgac
atgatctccaagcagagaattaccaatgtgcctcgggatgacataagccttcgcccagat
atgtatccctgcagcctttgctggaaggataatttaacactgattattggctggggaaat
tcagtaaagatttgctcagtaaaagaacggcatgccagtgaaatgcgtgacctcccaaac
cgctacgtggaaatagttttccaatttgacaccgaattctacgtcagtggacttgcgcct
ctctgtgaccagcttgttatactttcatatgtaaaggagatctccgaaaaaacggaagtg
gagtgttgtgcaaggcctagacttgatattgtacaacccctgcctgagtcctgtgaagag
atctcttctgatgcactaacagtacgaggatttcaggaaaatgaatgtcgtgattatcac
ttagagtattcggagggtgaatcacttttttatatcatcagcccaagagatgtggttgtg
gccaaagagcgggaccaagatgaccacattgactggcttcttgaaaagaagaaatacgaa
gaagctttgatggcagctgagatcagtcagaaaaccataaaaaagcacaagattttggat
attggcttagcctatataaatcatctggtggagaaaggagagtatgacctggctgctaga
aagtgccagaaaatccttgggaaaaacacagaactctgggaatttgaagtttacaagttt
aaagaaataggtcagcttaaagcaattagtcgttacttgccaagacgagatccagttttg
aaacctctcatctatgaaatggtcctgcatgaatttttggaaagtgactatgaggggttt
gcaaccctaataaaagagtggcctggagatctgtacaacaacacaatcatagttcaagct
gtagtggatcacctgaagaaagatccacagaacaggacgttgctacaaacacttgcagaa
ttgtacacttacgatcagcgctatggcagagccctagaaatctacttaactctgaggcac
aaagatgtcttccagttgatccacaagcacaatctcttcagttctatcagagacaaaatt
gttctgctcatggattttgattcagagaaagcagtagacatgcttttggataatgaggat
aaaatttctattgacagagttgttgaagaattagaaaacaggcctgagttacagcatgtg
tatttacacaagcttttcaaaagagaccaccataaaggccaacgatatcatgagaaacag
atcagcctttatgctgaatatgatcgaccaaacttacttccatttctcagagacagcaca
cattgcccactggagaaggctcttgagatctgccagcagagaaactttgtagaagagaca
gtctatcttctaagcagaatgggtaatagtcgcagtgccttgaagatgataatggaagaa
ttgcaagatgtagataaagctattgaatttgccaaggaacaagatgatggagaactttgg
gaagatctcattttatattctattgacaagccaccttttattactggtttgttgaacaat
attggaacccatgtcgatcctattcttttgatccaccgcattaaggaaggcatggagatt
cctaatttgagagactcactagtgaaaattcttcaggactacaacttgcagatcttgctg
cgggaaggttgcaaaaagatactcgttgctgattctctttctttattgaagaaaatgcat
cgaactcagatgaagggtgttctagtggatgaggagaatatctgtgaatcatgtctgtct
ccaatacttccttcagatgcctccaagtccttcagtgtggtagtgttccactgcagacac
atgtttcacagagagtgcctccctgtatctaacacagtatcttctgtccagttctgcaat
atatgcagtgccaaacacagggggccaggaagtgcagtcctggagatgaagaaatag

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