Lonchura striata (white-rumped munia): 110479570
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Entry
110479570 CDS
T05897
Symbol
SMARCD2
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 isoform X1
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110479570 (SMARCD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110479570 (SMARCD2)
03036 Chromosome and associated proteins [BR:
lsr03036
]
110479570 (SMARCD2)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110479570 (SMARCD2)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110479570 (SMARCD2)
PBAF complex
110479570 (SMARCD2)
GBAF(ncBAF) complex
110479570 (SMARCD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
Motif
Other DBs
NCBI-GeneID:
110479570
NCBI-ProteinID:
XP_021402630
LinkDB
All DBs
Position
27:complement(5549864..5564630)
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AA seq
457 aa
AA seq
DB search
MGPAAAQYQQRPGMPPGGRMPMAGLQVGPPGAPPYGAATPLRPGLPQAMMDPFRKRLLTP
QAQPPMATPRRGVKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIARKRMEIQE
AIKKPLTQKRKLRIYISNTFTPAKEEGEGGERVASWELRVEGKLLEDPSKQKRKFSSFFK
SLVIELDKELYGPDNHLVEWHRMPTTQETDGFQVKRPGDVNVKCTLLLMLDHQPPQYKLD
PRLARLLGVHTQTRASIMQALWLYIKHNKLQDSHEKEFINCNRYFRQIFNCVRMRFSEIP
MKLAGLLQHPDPIIINHTISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIA
SLDAKIHETIESINQLKTQRDFMLSFSNNPQDFIQEWIKSQRRDLKIITDVIGNPEEERR
AEFYQQPWAQEAVGRHIFAKVQQRRQELEQVLGIRLT
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgggcccggccgccgcgcagtaccagcagcgccccgggatgccccccgggggcaggatg
cccatggcagggctgcaggtgggacccccgggagcccccccgtacggagcagcgaccccg
ctgcggcccggcctgccccaggccatgatggatcccttcaggaagcgcctgctgaccccc
caggcacagccacccatggccaccccccgcagaggggtgaagaggaggaagatggctgac
aaggtgctgccacagaggatccgggagctggtcccagaatcccaggcctacatggacctc
ctggccttcgagcgcaagctggaccaaaccattgctcggaagaggatggagatccaggag
gccatcaagaaacccctgacacaaaagcggaagctcaggatttacatctccaacaccttc
accccggccaaggaggagggagaggggggagagcgtgtggcctcctgggagctccgtgtg
gaggggaaactgctggaggatcccagcaagcagaagaggaagttctcctccttcttcaag
agcctcgtgatcgagctggacaaggagctctacgggccggacaatcacctggtggagtgg
caccggatgcccacgacccaggagaccgacggcttccaggtgaagcgtcccggggatgtc
aatgtgaagtgcaccctgctgctcatgttggaccaccagcccccccagtacaagctggac
ccacggctggcccggctgctgggggtgcacacccagaccagggccagcatcatgcaggcc
ctgtggctctacatcaaacacaacaaactgcaggacagccacgagaaggagttcatcaac
tgcaaccgctacttccgccagatcttcaactgtgtccgcatgcgcttctccgagatcccc
atgaagctggcagggctcctgcagcacccggaccccatcatcatcaaccacaccatcagt
gtggatcccaatgaccagaagaagacggcctgctatgacatcgacgtggaggtggacgat
cccctcaaagcccagatgagcaatttcctggcctccaccaccaaccagcaggaaattgcc
tccctggatgccaagatccatgagaccatcgagtccatcaaccagctgaagacacagagg
gatttcatgctgagcttcagcaacaacccccaggatttcatccaggaatggatcaaatcc
cagaggagggacctcaagatcatcacggatgtgatcgggaaccccgaggaggagcggcgg
gccgagttctaccaacagccctgggcgcaggaggccgtgggcagacacatctttgccaag
gtgcagcagcgccggcaggaactggaacaagtgctcgggatccgcctcacctaa
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