Lonchura striata (white-rumped munia): 110479764
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Entry
110479764 CDS
T05897
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110479764 (COL18A1)
00535 Proteoglycans [BR:
lsr00535
]
110479764 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110479764 (COL18A1)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110479764 (COL18A1)
Proteoglycans [BR:
lsr00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110479764 (COL18A1)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110479764 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
110479764
NCBI-ProteinID:
XP_031361194
LinkDB
All DBs
Position
7:complement(1365004..1382724)
Genome browser
AA seq
1825 aa
AA seq
DB search
MAPPRLGFLLFLACCFSCSKTQLLDWVWDSTKTTGSPAVLGEGIPASEPPTSATALPPSP
SSGIRGGEVAGNVTIPWQQEPDPATAAPVGKGTAAQTTEQWDRNATGLVESTAWPSIAPL
HSMSPAPGQQAASTDDSQLLGSGTTEDLQLLGSETSKDPQLLWSRTTEDLQLLETGTAEH
LLLLRMRTTKDPQFLESVTPKDPQLLETGTAEDLKLLGSGTTENPQLLGAGTTEDPQLPG
MRTTGNLQLLAMRNTHFLRTVTTENPELLGNTENPQFLRTITTKDPEFLGTGTSTAMETQ
VSLQRPAGLQPGSAPFPFSPGDSTHGSGHPGLALASRKESQSLPWPDQRLDKGVDSPAAD
NSVPLEFDLLTATMQLSRSDSAGLTSFFLGLIPAAGRCQPIPTHLPFCSVLGTSHVRLPN
YLQHSSEEEIRAALHEWEGLLESRCHHYLEWFLCLLLLPGCSPSVPVTPPPCQGFCEAVR
DLCWSHLAGRRLPLPCDALPEEDEGVSCVFINASAESLSAEISLLELIGDPPTEEIHRIY
GPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAVTDASQSIIY
VGVKLSELRAGQQQIIFYYTEPGSPSSYPAATFTVPTLLNQWTRFAISVEEDEVVLYLDC
EEHERVRFERSPDEMELEEGSGLFVAQAGGADPDKYQGVIADLKLRGDPRAAERQCEEEE
DDAEVSGDFGSGMEGGQQSLSKVEGVPGLVDAVPVTSPPVVGGSGPRSGGGSLQQAERTR
AEETLRVSMGGTGQKGEKGEKGERGLKGDSGTSGIAGPGSVKGQKGEKGDLGVKGSAGFG
YPGSKGQKGEPGNPGPPGTLSRHADGSVVEQVTGPPGTPGKDGAPGRDGEPGDPGEDGKP
GEMGPPGFPGMPGEPGLKGEKGDPGMGPRGPPGPPGPPGPPGPSSKNDKLTFIDMEGSGF
GGDLESLRGPRGPPGPPGPPGVPGLPGEPGRFGMNCTDLPGPPGLPGRDGIPGPPGPVGP
QGPPGRDGEVGQSGPKGEQGDMGDLGLPGLPGPKGNKGEMGPAGPPGEMGLAGLPGPIGP
QGQPGPPGPPGPPGPGYEAGFGDMEGSGLSFTPGPPGPEGPQGVPGLPGVKGEVGSPGQP
GLPGPKGDAGMPGMDGRPGPEGFPGPQGPKGDKGSTGEKGERGQDGVGLPGPPGPPGQVI
SVSSEDKSLVAFPGPEGRPGRAGFPGPVGPKGDQGSTGPQGAPGLKGEKGEPGVIISPDG
TVVTAKVKGEKGEPGLQGPMGPSGPPGRAGMKGEIGFPGRPGRPGMNGLKGEKGDPADVL
GLRGPPGPPGPPGPPGPPGSIVYNNGNTFSDSSHPAFRGFHQFSGQKGEKGDTGPPGPPG
QFPYDASHFGTSLQGDKGDAGPKGEKGEPGSTPLYGPGVSGLPGPPGPQGYPGLPGPKGD
SIVGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQAVSIPGPPGPPGPPGPP
GSSGMSLGLQAMPTYQAMLSAAHELPEGSLVFLTDREELHVRLRGGFRRVLLEEHNLIPS
SALDNEVYDKPPTLHYAGPQPRGPLHPLHNHVPSATARPWHGDEVVANQHRLPEQPLLHH
QHELINGYYIHRRPDPAPVAAHVHQDFQPALHLVALNTPLSGGMRGIRGADFQCFQQARQ
VGLAGTFRAFLSSRLQDLYSIVRRADRAAVPIVNLRDEVLFSNWEALFTGSGAPLRTGAR
ILSFDGRDVLRDAGWPQKSIWHGSDAKGRRLPESYCETWRTEERAVRGQASSLASGKLLE
QAASSCQHAFIVLCIENSFMTATKK
NT seq
5478 nt
NT seq
+upstream
nt +downstream
nt
atggccccacctcgcttggggtttctgctcttcctggcttgctgcttctcctgctccaaa
acacagctcctggactgggtttgggatagcacgaagaccacaggaagcccagcagtactc
ggtgagggaatcccggcatcggagcctccaacctcagccacagctctgcctcccagcccg
tcctcagggatacggggtggtgaggtggcaggaaatgtcaccatcccatggcagcaggag
ccagatcctgctacagcagcacctgtgggtaagggaaccgcggcccaaaccacggagcag
tgggacaggaatgccacggggctggtggagagcacagcgtggccaagcatcgctcctctc
cacagcatgtcacctgccccaggacagcaggcagccagcactgatgactcccagctcctg
gggtcagggaccactgaagacctgcagctcctggggtcagagacctctaaggacccccag
cttttgtggtcaaggaccactgaggacctgcagctcctggaaacagggaccgctgagcat
ctgctactcctgaggatgaggactaccaaagacccccagttcctggagtcagtgaccccc
aaggatccacagctcttggagacagggactgctgaggacctgaagttgctggggtcaggg
actactgagaacccacagctcttgggggcagggaccactgaggacccacagctcccaggc
atgaggaccactgggaatctacagctcctggcaatgaggaacactcatttcctgaggaca
gtgaccactgagaacccagagcttctggggaacactgagaacccacagttcctgaggacg
ataaccaccaaggacccagagttcctggggacaggaacttctacagcaatggagacacag
gtgtccttgcagagaccagctggtctccagccaggtagtgccccttttcctttctcacca
ggtgacagtacgcatggcagcggccacccggggctggctctggccagcaggaaggagagc
cagagtctcccttggcctgaccagaggttggataagggtgtggattctcctgctgccgat
aactctgtccctctggagttcgatttactaactgctaccatgcagctctccaggagtgac
agtgcggggctcacatccttctttctgggactgataccagcggccggccgttgccagccc
atcccgacccacctgcctttctgcagcgtgctgggcaccagccatgtccgattgccaaat
taccttcagcatagcagcgaggaggaaattcgggcagctttgcatgagtgggaggggctg
cttgagtcgcggtgccatcactacctggagtggttcctctgcttgctgctgctccctggc
tgtagcccctcggtccccgtaacccccccgccgtgccagggcttctgcgaggccgtcaga
gacctgtgttggagtcacttggccggcaggcgcctgcctctgccttgcgatgctctccct
gaggaggatgaaggggtttcttgtgtctttattaatgcttctgcagagagcctgagtgct
gagatcagcctgctggagctgattggggacccaccaacagaggagatccacagaatttat
ggccctgacaacaacccaggctacgtcttcggtcccaatgccaacacgggccaggtggcc
cggtaccacctgccgagccctttctaccgggacttctcgctgctgttccacatccagccc
accacgccccgggctggcgtgctctttgctgtcacggacgcctcgcagagcatcatctac
gtgggagtcaagctctcggagctgcgcgcgggccagcagcagatcatcttctactacacg
gagccgggctcgcccagctcctacccagcagccaccttcaccgtgcccaccctgctcaac
cagtggacgcgctttgccatcagcgtggaggaggatgaagttgtcctctacctggactgt
gaagagcacgagcgcgtccgcttcgagcgctccccagatgagatggagttggaagagggc
tccgggctctttgttgctcaggctggaggggctgacccggataaataccagggggtgatt
gcagatttgaaactccgaggggacccgcgggcggctgagcgccagtgtgaggaagaggag
gatgatgcagaggtctctggggattttggcagtgggatggaaggtggacagcagtcctta
agcaaggttgagggtgtcccagggctggtggatgctgtccctgtgacctccccccccgtg
gtggggggcagtggcccgaggagtggcggggggtccctgcagcaagctgagaggaccaga
gcggaggagacgctgcgggtctctatgggaggcaccggtcagaaaggcgaaaagggagag
aagggggaacgtggcttgaaaggggactcggggaccagtggcattgcagggccaggcagt
gtcaagggtcaaaagggggagaaaggagacctgggtgtcaagggcagtgctggatttggc
taccctggctctaagggccaaaaaggagaaccaggtaaccctggaccccctgggaccctc
tctcggcatgctgatggctcagtggttgagcaggtcaccgggcccccagggacaccaggg
aaggacggagcccctggcagggatggcgagcctggagatcctggcgaggacggcaaacct
ggtgaaatggggcccccagggttccccgggatgccgggggagccgggcctgaagggggag
aagggtgacccaggcatggggccgagaggaccccctggaccacctggccctccaggacca
ccgggaccctcctccaagaacgacaagctgaccttcattgacatggagggctctggcttc
ggtggtgacctggagagcctgcggggtccacgagggccacctggtcccccagggccacct
ggcgtgcccggtttgccaggggagccagggcgttttgggatgaactgcacagacctgcca
ggaccacctggactgccgggcagggacgggatccctgggcccccggggccagtgggtcct
cagggtcctccaggaagagatggggaggttgggcagtcggggcccaaaggagagcaggga
gatatgggtgaccttggcctccctggcctaccaggacccaagggcaacaaaggagaaatg
ggaccagcaggacccccgggagaaatgggcttagctggccttcctgggcccatcggaccc
caagggcagccaggaccccctggccccccaggaccaccagggccaggctacgaggctgga
tttggtgacatggagggctcagggctgtcattcacccctggaccacctgggcctgaagga
ccacagggtgtgccgggactgccgggggtgaagggagaggtcggcagccctggacagcct
ggcttgccaggcccaaagggagatgctggcatgcctggcatggatggccgccctggcccg
gagggcttccctggaccacagggacccaaaggtgacaaaggcagcaccggtgagaaggga
gagcgaggccaagatggagtggggcttcctggcccccctggtcctcctggacaggtcatc
agtgtctccagtgaagataagtctttggtggcttttcctggtccagagggtagaccaggc
cgtgctggcttcccggggccggtgggaccgaaaggagaccaggggtcaactggtccccag
ggtgccccaggattgaagggggagaagggggagcccggcgtcatcatcagccctgatggg
actgtggtcactgccaaggtgaaaggagaaaagggggagccagggctgcaaggcccaatg
ggaccatcgggtcccccaggacgagcagggatgaagggagagatcggctttccaggcaga
cccggacgtcccggcatgaatgggctgaagggcgagaagggtgaccccgcagacgtgctg
ggcttgcggggtcccccaggacccccaggacccccagggccccctgggccacctggcagc
atagtctacaacaatggcaataccttcagtgactccagccacccggcgttccgtggtttc
caccagttctcaggacaaaagggagagaaaggtgacactggacccccaggacccccaggc
cagttcccctatgatgcaagtcactttggtaccagcctgcagggtgacaagggagatgca
ggtcccaagggtgagaagggtgagccaggcagcaccccactctacggtcctggagtctct
ggacttccagggcctccagggccccagggataccccgggctgccgggtcccaagggggac
agtattgttggtccaccggggcctccaggacctcagggtccccctggtatcggatatgag
gggcggcagggcccccctggccctcctggtccgcctggaccaccctccttcccaggtccc
cacagacaagctgtcagcatccctggacccccaggacccccaggaccccctggaccacca
ggcagtagcgggatgtccttggggctccaggccatgcccacataccaggcgatgctgagt
gctgcgcacgagctgcccgagggcagcctcgtcttcctgacggaccgggaggaactccac
gtccgcctgcgcgggggcttccgcagggtgctgctggaggagcacaacctgattcccagt
tcggctctggacaacgaggtgtatgacaagccacccaccctccactacgccggcccccag
ccccgtgggcccctgcacccgctccacaaccacgtcccctcggccactgcccgtccctgg
catggggacgaagttgtggccaaccagcaccgcctgcctgagcagcccctgctccaccat
cagcatgaactcatcaatgggtactacatccaccgccggccagatcctgcccccgtggcc
gcccatgtgcaccaggacttccagcccgctcttcatctggtggccctgaacaccccgctg
agtggtggcatgcgtggcatccggggcgctgatttccagtgcttccagcaagcccggcag
gttgggctggctggcaccttccgtgccttcctgtcctcgcgcctgcaggatctctacagc
attgtgcgccgggccgaccgagccgctgtccccatcgtcaatctcagggatgaagtgctc
ttcagtaactgggaagcccttttcacgggtagtggggccccgctgagaactggtgcccgc
atcctctcctttgacggccgggatgtcctacgggatgcaggatggccgcagaagagcatc
tggcatggctcagatgccaagggtcggcgcctgcccgagagctactgcgagacatggcgg
acagaggagcgtgcagtgaggggccaggcttcctctttggcctctggaaaactgctggag
caggcggccagcagctgtcagcacgccttcattgtcctctgcattgagaacagcttcatg
actgctaccaaaaagtga
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integrated database retrieval system
