Lonchura striata (white-rumped munia): 110480078
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Entry
110480078 CDS
T05897
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain
KO
K06237
collagen type IV alpha
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04382
Cornified envelope formation
lsr04510
Focal adhesion
lsr04512
ECM-receptor interaction
lsr04518
Integrin signaling
lsr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110480078 (COL4A6)
04518 Integrin signaling
110480078 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110480078 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110480078 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
110480078 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lsr04147
]
110480078 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
lsr00536
]
110480078 (COL4A6)
Exosome [BR:
lsr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110480078 (COL4A6)
Glycosaminoglycan binding proteins [BR:
lsr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110480078 (COL4A6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110480078
NCBI-ProteinID:
XP_031360659
LinkDB
All DBs
Position
4A:complement(11498454..11611385)
Genome browser
AA seq
1695 aa
AA seq
DB search
MGRTGALLLLLLWLGAELASAGGKKSYSGPCGGRNCSAGCKCFPEKGARGRPGPIGLQGP
IGAPGFTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQSGPRGP
PGLDGCNGTAGSRGISGPDGFPGLPGLPGRPGPKGLKGEPVFAQGGLKGMKGENGLPGLD
GVPGPKGFPGPIGPAGPIGLPGLQGPVGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPQGFPGDQGLPGIPGFGGIGEKGEKGVPGLPGGRG
LLGRDGSEGIPGRKGHPGVPGYPGLDGAEGMKGELGDIGPPGPPVIIDREGVVISGAPGD
PGSPGIPGPPGDEGVIGLPGLPGAPGFPGLERDGMGPGGSPGIPGVKGEVGEPGRATIGI
PGPPGRGGLPGLPGAPGLPGSPRPSFSPVIILSGRTGAPGQPGQRGLPGALGPKGYKGEA
GGCACDGGVTRAGLKGISGPPGLSGSPGVPGAKGVGGDPGSVGAPGLRGPPASAGQQGPP
GLKGEKGDPSYATVKGARGDRGATAPRGPSGIPGAPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGLPGSKGHRGETGSPGIGYPGPSGVRGPPGDSGMDGFPGQAGLPGPPGITLPCIV
PGAYGPPGTPGFPGLPGPKGSKGFSGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSRGLPGLDGTDGLPGKMGPSGLAGIKGALGDVFGAESGTVGERGRPGLPGDKGLTGDI
GFPGPKGLDGRPGLLGVKGEQGHPGYSGVPGLQGPPGPGGPFGIKGKPGPLGSAGLAGAP
GCQGPPGVKGVAGDVGPQGPAGMKGFPGLDGAPGSPGERGLLGPPGSFGQDGHPGFSGPK
GEKGSSGLLGFPGMPGLPGVPGVNGFKGTPGTAGGKGSPGVVGLQGQKGDRGDIGPPGLP
VLGTSEQALQIKGDKGDPGLAGLGGFPGPRGDKGISGSRGQPGFPGPVGSPSKERGLQGD
PGFPGPPGQPGLPGQKGAHGIMGFPGMPGERGSDGTTGILGFPGPIGLPGPKGEQGESVG
VPGIAGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGPKGSPGDLGQEGPAGIPGNAG
LRGAPGPPGPPGQPGSVGFPGARGTVGPKGFHGFPGLSGLNGLPGTKGSPGTPGLSEAGL
KGPAGLPGTKGEEGSPGLGRGAAGFPGPKGSSGDMGPPGPMGLPGLPGTPGVSLPSDIRG
RPGDAGVPGTEGSSGFPGPPGPRGTPGPASDQGDTGTPGFPGVLGLRGIKGDVGPTGPVG
LPGASGFKGARGEPGLMGMPGKDGPPGDPGYAGLKGEMGPRGLPGRPGAPGITPQPEEVT
APAGLPGLPGIDGVPGFDGDPGFHGPAGKPGPKGLPGRSGLKGRDGLPGAPGIPGDPGLS
GAPGPQGFEGAAGKPGPLGLPGMPGRSAAVGYTLVKHSQSEQIPPCPIGMNKLWDGYSLL
YVEGQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPV
DSVQIPQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQ
SLVSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTVEQEQQFVSAPPSETLKAGQ
LRTRVSRCQVCMKNL
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcacaggggcgctgctgctgctgctcctctggctgggcgcggagctggcgagt
gcgggtggaaagaagtcctacagtgggccatgtgggggccgcaattgcagtgctggatgc
aaatgttttccagagaagggtgcacgaggtcgaccaggaccaattgggcttcaaggacca
ataggagcacctggatttactggcccagaaggtttgcctggagcaaaaggtgagagagga
gcagtgggccctcctggaccagctggacagaaaggtgacaagggtccaatgggagttcca
ggattccagggtatcaacgggatcccaggtcaccctgggcagtctggacccagaggcccc
cctggcctcgatggctgcaatggcaccgctgggagtcgtggcatttctggacccgatggg
tttcctggcctacctggactgcctggtcgtcctggcccaaaaggccttaaaggagaacct
gtttttgctcaaggcggtcttaaaggaatgaagggtgaaaatggtcttcctggattggat
ggagttcctggcccaaaaggttttccaggtccaataggtcctgcaggccctataggatta
ccaggtttgcagggtccagtgggtccccctgggccaccaggtcccaaaggtaacatggga
ttaggttttcaaggagagaaaggagaaaagggtgatgtgggcctgcctgggcctccaggt
cccccaccatccactggaatactggaattcatgggatttccaaaggggaagcaaggagaa
aagggtgagccagggcctcaaggattccctggagaccaaggattgcctggcatcccgggc
tttggaggtattggagagaaaggagaaaaaggtgtgcctggcttaccaggtggcaggggt
cttttgggacgggatggatctgaaggaattccagggagaaagggccatccaggtgttcca
ggctatccaggactggatggagcagaaggcatgaagggtgaattaggtgacatcggtccc
ccaggtccacctgtcattattgacagggaaggtgtagtcatttcaggtgccccaggtgac
cctggcagcccaggaatacctggtcctccaggagatgaaggggtcattggtttaccaggc
cttccaggggctccagggtttccaggcctggagagagatggaatgggccctggagggtct
ccaggtattccaggagtgaagggtgaagtgggagaaccaggaagagcaacaattggaata
ccaggccctcctggcagaggtggtttaccaggtctgccaggggcaccaggattgcctggt
tcaccacgcccttcattctccccagtgataatcctgagtggaaggactggagccccaggg
cagcctgggcaaagagggctgccaggagctttgggtccaaaaggctacaaaggagaggca
ggtggttgtgcttgtgatggaggagttacaagagctggcctaaaaggcatctcaggccct
ccaggtctgtcaggaagccctggtgtacctggtgccaagggtgttggtggagacccaggc
tctgtgggagcaccaggactgcgtggccctccggcttcagctggtcagcaaggacctcca
ggtcttaagggagaaaaaggggatccatcctatgcaacagtcaaaggtgctcgtggggac
cgtggtgcgacagcacccagaggaccttcaggcatcccaggagctccaggcagggatgga
cttccaggcttaccaggcccaccaggccctccaggtgatggtgggctgggtttcccaggt
gaaaaaggcctgccaggattacctggctccaagggccatcgaggagaaactggttctcct
ggcattggatacccaggccctagtggagttcgtggaccaccaggtgacagtggaatggat
gggtttccaggacaagcaggccttccaggccctccaggtatcaccttgccctgcatagtt
cctggagcatacgggcccccagggactcccggctttccaggactgccaggtcctaaaggc
agcaaaggcttttctggcattccaggccaacctggattacatgggtctaaaggacagcca
ggatctccaggaataataggcttgcaaggggaacctggcttccctggacctcgaggagaa
caaggctcacgaggacttccaggactggatggaacagatggtttacctgggaaaatgggt
ccttcaggcttagctggaataaaaggagctcttggagatgtatttggtgctgagagtgga
actgtgggagagcgtggccgacctggacttccaggtgataaagggcttacaggtgatatt
ggatttccaggaccaaaagggctggatggaagaccaggcctcctgggtgttaaaggtgaa
cagggtcatccaggatattcaggtgttcctggattgcaaggtcctcctggccctgggggc
ccttttggcattaagggaaaaccaggacccttggggtcagctggccttgcaggagcacca
ggctgtcaaggacctcctggagtcaaaggtgtggctggggatgtaggaccacaaggccct
gctggtatgaaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagagga
ttgctagggccacctgggagttttggtcaagatggacatccaggtttctctgggccaaaa
ggtgagaaaggatcttctggcctgcttggtttccctggcatgccaggacttcctggtgtc
cctggagtgaatgggtttaaaggaactcctggcacagctggaggaaaaggaagtccagga
gttgtgggacttcaaggtcaaaaaggtgacagaggtgatataggtccacctggtcttcct
gttcttgggacttcagaacaggcactgcaaatcaaaggagacaaaggagatcctggatta
gctggacttggaggattcccaggacctagaggtgacaaaggaatctcaggaagccgtgga
cagcctggtttccctggtccagttgggtcaccaagcaaagagagaggtcttcaaggtgac
ccaggcttccctggtccacctggacaacctggcctgccagggcagaagggtgcacatggt
atcatgggatttccaggaatgccaggagagaggggttcagatggcaccacaggaatactt
ggattcccaggacctattggccttcctggtccaaagggtgaacagggagagtctgttggt
gttcctggcattgctggaccaaaaggagagagaggagacccaggatttccaggagagaga
gggagagaaggactcaagggtgaaccaggctatccaggaaacactggggtgaatggaccc
aaaggcagcccaggagatcttggccaagaaggcccagcaggaatccctggaaatgctggg
ctgagaggagcccctggcccaccaggacccccaggacagccaggatctgttggattccct
ggagctcgtggaacagtgggacctaaaggctttcatggatttccaggtttaagtggtctg
aatggcttgccaggcacaaaagggtctcctggaacaccaggtctgagtgaagctggactg
aaaggacctgcaggcctcccaggtacaaagggtgaagaaggctctccaggcttgggaaga
ggagctgcaggattccctggaccaaaaggctcatcaggagacatgggtccccctggtcct
atgggcctgcctggcctgccaggaacacctggagtttctcttccatctgatatacggggc
aggcctggcgatgctggtgttccaggcactgaggggagttcaggttttccaggtcctcca
ggaccacgggggacccctggcccagcttctgaccaaggtgacacagggactccaggtttc
cctggtgttcttggcttgcgaggcattaagggcgacgtgggacccactggtccagttggg
ctccctggagcatctggattcaaaggtgcaagaggtgagcctggcctaatggggatgcca
ggtaaagatgggcctccaggggatcctggttatgctgggctgaaaggtgaaatgggccct
cgaggtctccctggcagaccaggggctccaggaataaccccacagccagaagaagtcaca
gcccctgcaggattacctggtctgccaggaattgatggtgttcctggctttgatggagat
cctggattccatggtccagctggaaaaccaggcccaaaaggtttgccaggaagatctggt
ttgaaaggacgtgatggcttacctggagcccctgggatacctggagatccaggactttca
ggtgccccaggaccacagggatttgaaggtgctgcggggaagccggggcccctcggtttg
ccgggaatgcccggccggagcgcggccgttggatacactctggtgaagcacagtcagtca
gagcagatccccccgtgtcccataggcatgaacaagctctgggatggctacagcttattg
tatgtggaggggcaggagaaggcacacaaccaggatctgggttttgctggctcatgtttg
cctcgcttcagcaccatgccttttatttactgcaacatcaatgaagtgtgctactatgcc
agccgaaatgacaagtcctactggctgtccactactgctcccatccccatgatgcccgtg
gacagtgtccagatcccacagtacatcagccgctgctctgtgtgtgaggcaccttcccag
gctgtggctgtgcacagccaggacatcaccatcccacagtgtcccctgggctggcgcagc
ctctggataggatactccttccttatgcacactgcggcaggggcggaaggtggaggccag
tcccttgtctcgcctggctcctgcctggaggatttccgagctactccattcatcgagtgc
aatggtgctcggggaacgtgccactactttgccaacaagtacagcttctggctgaccacg
gtggagcaggagcagcagtttgtcagtgctcctccctcagagactctgaaagcggggcag
cttcggactcgtgtcagccgctgccaggtgtgcatgaagaacttgtag
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