Lonchura striata (white-rumped munia): 110480239
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Entry
110480239 CDS
T05897
Symbol
LMO7
Name
(RefSeq) LIM domain only protein 7 isoform X1
KO
K06084
F-box protein 20
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04520
Adherens junction
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
110480239 (LMO7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110480239 (LMO7)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
110480239 (LMO7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
PDZ
PDZ_6
LIM
PDZ_2
Motif
Other DBs
NCBI-GeneID:
110480239
NCBI-ProteinID:
XP_021403709
LinkDB
All DBs
Position
1:68291375..68423623
Genome browser
AA seq
1812 aa
AA seq
DB search
MDGREDAECDLQAAFAEARRWVEAVTRQSFETEDFRAALENGVLLCDLINKIKPGIVKKI
NRLPTPIAGLDNINVFLKACENIGLKEAQLFHPGDLQDLSNRVTVKPEETNRRVKNVLIT
LYWLGRKAQSDPDYNGPYLNLKAFEKLLGQALSKALEESSQPSRSGRDSGYGDIWYVDRA
EPFSSSVTHKRDDSFDSLDSLGSRSCTSFSSDITLKGGSEGCDSDTDSELPSKMHDSHKD
DRSYRRISMIEPKPTTDFNRFLPNKNKQTAYVPAPLRKRRTEKNEDNRRSWASPVSTESD
GSFSSGCETNPLASCQNSRAECGLTNPASLQIIYEYDSSSDSEDERRLPDIVLDDLANRR
FLVKKSPVSSGAPGHHFMLRNDSSKSCSQESYPAGPLAAMLEPLSNQRRQRQLDTKEENK
PRVNNPSQLSGYCDEDEEEAGIPNIEKDDLYFRKLSSSAPNTVVAFDKFLPKFWTPEEEF
LWKKIKKSSFKPWYKEIQGFSRKRSDSEDEEFAYKQSCTIVANQPRPSFDWNSSCRRDQN
YKPAAEYVGSSLSQIAEGKILESSDQPSQFSLLQALQKYTDYVSSEMETRIDPASGPRLI
KCRKNVSFIPGGKQEDEENGYLYPDLENDDLFVRKTGAFHVNQVVLQDPRYLKKFSEQEP
PVEGEIILQPREGQTVIPDLEKDDMIFRKVLSQKKEVPLSGAPDKYHPALFPDPWSLPEE
IRSKFLCLLEKNAIPEERKSNGRVLSPSLHHKKDDMLTRKIESWKVGSNAQPVNFIPGPC
SEEDWKKWEAIREASKVRHKKRQMVERLFQKLSDEQGSKSLNDVSAEELQTLRKIRYEEL
QKIKEQLQEQDLKWQEDLAKWKSRRKSYTSELQKKKEEREEIERRASEVSGRSTKSLKEM
EQEREERDQDSYEQQKQEHNWAYSLNDDVFSEEKAPSTAAKDWSAAKDYRLEEDRSYSAK
DSKSVYASQPPRENLPESSAAQEAPVPPEGLEREQSPALLSTRYSVNAQTGSAQVSASLP
RTYQKTDTSRLTSVVTPRPFGVHSRGISSLPRSFTMDDAQKYNGEVEKAKRTQTLFTSIS
FSQPDSTHPLSTGAFRSREIASLTEPKDSKSMEQYSEMRISINQRPGHSRSFGFTTNWSS
SGAIVQTVEEGSPAALCQLHVDDEIIAVNGTKVSHMDYSQWEEAISRALETGNLVMDVRR
YGKNDWGKDLPSLPHVRHKILNLTSMATNIIGTSENKWIDATSGEKISNASTTSTKRDFS
SSLQSSDTETKLINGMQGDAGSNEQRASEPISLKNLKRRSQFFEQGSSGYSYNSWVYLCG
GPEPAMPDLPVPSISAPSRRVWDQEEERKRQEKWQKEQDRLLQEKYQREQEKLREEWLRA
KQEAEKESSKYFDEEQTVLTLNTTSVTSQAPPVSSWRASPEANAPEEPERDGENELAASL
LHEEEGRRRLQEEQRIQEEAARHFEQEQELQELELERQRKEREQQHAEEQRQQAEKQKEV
SVEVPQYQRHYEHYEVSKTIEDRAGHPVIDRHYERYEVSKTIEEQPGQAFADRNKSKSTT
ELNEFNTIRNGTQSKYSERSWNMGESQKKSQKEQNLSAAELERQQILQEMRKKTSLHTDS
SWIRQRSASIHKEPISLYSSSMRRGESLDNLDSSGMRSWRHHSWLHQSASSSSLSSSQDT
SRPVSTSNRAYMCTPSSSKAPPVATSVRNPSTSQTAPRAQSPLSASQSGSQTRSRSVSGK
KICSYCNNILGKGAAMIIESLGLCYHLHCFKCVACGCDLGGSRSGAEVRIRNNKLFCNDC
YIRFKTGQPTSM
NT seq
5439 nt
NT seq
+upstream
nt +downstream
nt
atggacgggagagaggacgcggagtgcgacttgcaggcggcgttcgccgaagcccggcgg
tgggtggaggcagttaccaggcaaagctttgaaactgaagactttagagcagctctagaa
aatggagtcctgttgtgcgatttgattaacaagatcaaacctggcattgttaagaagatc
aatcgtctgccaactccaatagctggcttggataatataaatgtttttctgaaagcctgt
gaaaacattggactgaaagaagctcagctttttcacccaggagatcttcaggatttgtcc
aatcgagttacagtcaaaccagaggaaaccaacagaagagtgaaaaatgttttgattaca
ttatactggcttggaagaaaagctcaaagtgaccctgattataatggtccatacctgaat
cttaaagcatttgagaagttattagggcaagcattgagtaaggcacttgaagagtccagc
cagcccagcagaagtggcagagatagtgggtacggcgatatttggtacgttgaccgggca
gagcccttctcatcttcagttactcataaaagagacgattcctttgatagcttggactct
cttggttcaagatcctgcacaagcttttcatcggatataaccttgaaaggtggcagtgaa
ggttgtgacagtgacacagactcggaactgccttccaaaatgcatgactctcataaagat
gacaggtcttaccgcaggatttctatgattgaaccaaaacctaccactgacttcaatcgc
ttcttacccaacaaaaacaagcagacagcatatgtgccagcacctttaaggaagaggagg
acagagaagaatgaggacaacaggaggagctgggcaagtcctgtttccactgagtcagat
ggatcattttcaagtggatgtgaaacgaatcctctagcttcctgccaaaatagcagagca
gagtgtgggctcacaaatccagcttccctccagatcatctatgagtatgacagtagctct
gattcagaagatgaaagaaggctgcccgacattgttttggatgacttagcaaatcgtaga
tttctagtcaaaaagagccctgtaagctctggtgcacctggacatcatttcatgttgcgc
aatgactcttctaaatcttgctcgcaagaaagttatccagctggtccactagctgcaatg
cttgaaccactgagtaaccagaggaggcagaggcagttggatactaaagaggaaaacaaa
ccaagagttaacaatccttcacagttatctgggtattgtgatgaggacgaggaagaagca
ggcatcccaaacattgaaaaagatgatctctattttcgcaagctaagttcttcagcgcca
aatacagttgttgcctttgacaaatttcttcctaagttttggactccagaggaggaattt
ctatggaaaaaaatcaagaaatcctctttcaaaccctggtataaagagattcaagggttc
agtagaaagagatcagattctgaggatgaggaatttgcttacaaacaaagctgtaccatt
gttgctaatcaaccaagaccaagttttgactggaacagtagctgcagaagggatcagaat
tataagccagctgctgaatatgtgggaagctcattgtcacagattgcagaaggaaaaatc
ttggagtcttctgatcagcccagtcagttttcgttacttcaggccctgcaaaaatacact
gactatgtgtcttctgaaatggagaccagaattgatcctgcttctggccctaggctcata
aaatgtagaaagaatgtttcctttataccaggaggcaagcaagaagatgaggaaaatggg
tatctatatccagatctggaaaacgatgatttgtttgttcggaaaactggggctttccat
gtgaatcaagttgttcttcaagacccccggtatttaaagaaattctctgagcaggagcct
cctgtagagggtgagataattctgcaacccagagagggccaaactgtgattccagatttg
gaaaaggatgacatgatttttcgtaaagtcctctctcaaaaaaaagaggtgcctttatca
ggtgctcccgataagtatcacccagcgctgtttcccgatccatggagtcttccagaagag
atccggtccaaatttttatgtttacttgaaaaaaatgcgataccagaggaaaggaagagc
aatggcagagtgctgtcaccatctttacatcataagaaggatgatatgttgacgcgcaag
attgaatcttggaaagtgggaagcaacgcccagccagtaaattttatcccaggtccatgc
agtgaagaagactggaagaagtgggaagcaatcagggaagccagcaaagttagacacaag
aaacggcagatggtggagagactgtttcaaaagctttctgatgagcaagggagtaaatct
ttgaatgatgtcagtgcagaggagctgcagacactgcgcaaaatccggtatgaagagctg
cagaagataaaagagcagctacaagaacaagatctaaagtggcaggaagatctagcaaaa
tggaagagtcgtagaaagagttacacttcagaattgcaaaagaaaaaggaagagagagaa
gaaattgaaaggagagcctctgaggtgtctggaagaagtaccaagtcgctgaaggaaatg
gaacaggagagggaagagagagatcaggactcctatgagcagcagaaacaggagcacaac
tgggcttattcactgaacgatgatgtgttcagtgaagaaaaagcaccttccacagcagca
aaagattggtcagcagccaaagattaccgtttggaagaagatcgctcctacagcgccaag
gacagtaaaagcgtgtacgcctcacagccgcccagggagaacctgcccgagagctcggct
gctcaagaagctcctgtgcctccagagggcctggagcgggagcagagcccggctcttttg
tccactcgttactcagtgaatgctcaaactgggtcagctcaggtttcagcttctctcccg
agaacttaccagaaaactgatacctccaggttaacatctgtggttacaccaagacctttt
ggtgtccactcaagaggaatctcatcacttccacggtcgttcacgatggatgatgctcag
aaatacaatggagaagtagaaaaagctaaaagaactcaaactttgttcaccagcatttcc
ttttcacaaccagactccacacaccctctctccactggtgcattcagaagcagagaaatt
gcaagtctgacagagcctaaggattcaaaatccatggaacagtacagtgaaatgagaatc
agtataaaccagagacctggccacagtcgcagctttgggtttacgacaaactggagttct
tcaggagccattgtacagacagttgaagaaggcagccctgcagcactttgtcagctgcat
gtagacgatgagatcattgctgtcaacggcacaaaggtttcacatatggactacagtcag
tgggaagaagccatcagcagagcactagaaactggaaacctggtcatggatgtcagacga
tatggaaagaatgattggggcaaagacctgccttccctgccacatgtaaggcataaaatc
ctcaatctcaccagtatggctaccaacattataggtacatctgaaaataaatggattgat
gcaacttcaggagaaaaaatttcaaatgcttccaccacatccacaaaaagagatttctcc
agcagccttcagagttctgatacagaaacaaaattgataaatggaatgcaaggagatgct
ggctctaatgaacaaagagcatctgagcctatttctttgaaaaacttaaaaaggcggtca
caattttttgaacaagggtcatcaggttattcttacaattcatgggtctacctttgtgga
ggcccagagcctgcaatgcctgatctcccagtcccatccatcagcgctcccagtcgtcgg
gtttgggatcaagaggaagagcgaaaacgacaggaaaaatggcaaaaagagcaggaccgt
ttgttgcaggagaaataccaacgagaacaagagaaactgagggaagaatggctacgagct
aagcaagaagcagaaaaagagagctccaagtattttgatgaggagcagaccgttctaaca
ctaaatacaacatccgtcacttctcaggctccacctgtgtccagctggagagcaagccct
gaagcaaatgctcccgaggagccagaacgagatggagaaaatgaactggcagcgagcttg
ctgcacgaagaagaaggaaggaggaggcttcaggaggaacagaggatccaggaagaagca
gccaggcattttgagcaagaacaggagctccaagagctggagctcgagagacaacgtaaa
gagagggagcagcagcacgctgaggagcagaggcagcaggctgagaagcagaaggaggtg
tcagtggaggtgcctcagtaccaaagacattatgagcactatgaagtatctaaaacaata
gaggatcgagctggccatcctgtcattgacaggcattatgagcgttatgaagtttctaaa
accattgaggagcaacctggccaggcatttgctgacaggaataagtccaagtcaactaca
gagctgaatgaattcaacacaatcagaaatggtacccagagcaagtattctgagaggtcc
tggaacatgggtgagtcacagaagaagtctcagaaggagcaaaacctttctgcagcagag
ttggagagacagcaaatccttcaggaaatgagaaagaaaacatctctacacacggacagc
agctggattaggcagcgcagtgccagtatacataaggagcccattagtctgtacagcagt
agtatgaggagaggggagtctttggacaatcttgattcttcaggaatgagatcatggagg
caccactcatggctgcatcagtctgcatcctcttcatctctatcttctagtcaagatact
agtcgcccagtatccacttcaaaccgagcctacatgtgcactccttcctccagcaaagca
cctcctgtggccacctctgtgagaaacccctccacgtcccagacagccccccgggctcag
tctcccctctctgcttcccagtcagggtcccagacacgcagcaggtcagtcagtgggaag
aaaatctgttcatactgtaataacattctgggcaaaggagcagccatgatcattgaatct
cttggtctttgttatcatttacattgctttaagtgtgttgcctgtggatgcgaccttggt
ggatcccgctctggagctgaagtcaggatccgaaacaacaaactcttctgcaacgactgc
tatatcagatttaaaactggacaaccaacctccatgtga
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integrated database retrieval system
