Lonchura striata (white-rumped munia): 110480437
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Entry
110480437 CDS
T05897
Symbol
UPF3B
Name
(RefSeq) regulator of nonsense transcripts 3B
KO
K14328
regulator of nonsense transcripts 3
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03013
Nucleocytoplasmic transport
lsr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110480437 (UPF3B)
03015 mRNA surveillance pathway
110480437 (UPF3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110480437 (UPF3B)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110480437 (UPF3B)
mRNA cycle factors
P-body specific factors
110480437 (UPF3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
110480437
NCBI-ProteinID:
XP_021404043
UniProt:
A0A218V3C2
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Position
4A:complement(9083853..9091035)
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AA seq
482 aa
AA seq
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MKEDKENARPKERRGAPAAPGVLLPAAPGSGPAAGTDGRAGAAELDRLERPKDKKETLSK
VVIRRLPPSLTKEQLEEHLQPLPEHDYFEFFANDSSLYPHMFSRAYINFKNQEDIVLFRD
RFDGYVFVDHKGQEYAAIVEFAPFQKAAKKKSKKKDAKTGTIEDDPEYKKFLESYSADDE
KLTSTPETLLEEIEARNKELIAKKTTPLLNFLKNKQRLREEKREERRRRELERKRQREEE
RRKWKEEERRKRKEAEKLKKVDRCPEKERDRSKEEPKIKLLKKPEKDEKDLERKEKSKKL
ERETLREEKNASSASAKRSDGETKEEKAKKSEDECVKDYRDRDRDFDRDRDYERAQREKL
RRQEEERRRQKERYEKEKVFRRKEEEVKKERDLLREKGKKSDLTDFTSSMDKSEKVTKDD
KKEDTIKRDRIRNKDRPAMQLYQPGARSRSRLCQYEDSAAKPPDQGVDKKQEGETSHTKE
EE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggacaaggagaacgccaggcccaaggagcggcgcggggcccccgccgcgccg
ggggttctgctgcccgcggcaccgggctcgggccccgccgccggcacggacggcagagcc
ggcgccgccgagctcgatcgcctggagcggcccaaggacaagaaggagacgctcagcaag
gtggtgatccgccggctgccgcccagcctgacgaaggagcagctggaggagcacctgcag
cctctgcccgagcacgactacttcgaattcttcgccaacgactccagcttgtacccgcac
atgttctccagagcctacatcaacttcaagaaccaggaagacatagtcctcttcagggat
cgcttcgacggctacgtttttgtggatcacaaaggtcaggaatatgctgcaatagttgag
tttgcacctttccaaaaagctgccaaaaagaagagtaagaaaaaggatgccaaaactgga
actattgaagatgatccagaatacaagaagtttttggaaagttacagtgcagatgatgaa
aaattaacttccactcctgaaactttgttggaggaaatagaggcaagaaacaaagagcta
atagctaaaaagactactcctttattgaacttcttgaaaaataaacagagactgagagaa
gaaaaaagagaggagagaaggaggagagaattagaaagaaaaagacaaagagaagaagaa
agaagaaaatggaaagaagaggagagaaggaagagaaaagaagcagaaaaattgaagaag
gtagacagatgcccagaaaaagaaagagacagatcaaaagaagaaccaaagattaagcta
cttaagaagcctgaaaaagatgaaaaagacttggagagaaaagaaaaatccaagaaactg
gaaagagagactctgagggaggaaaaaaatgcgagtagtgcatctgccaaacgatctgat
ggggagacaaaagaagagaaggcaaaaaaatcagaagatgagtgtgtaaaggactacagg
gaccgagatagagattttgacagagacagagactatgagagagcacagagagagaaactg
agacgccaagaagaggagcgtcggaggcagaaagagcgctatgagaaagagaaggttttt
agaagaaaagaggaagaggtgaaaaaggagagagacttactcagagaaaagggaaagaaa
agtgatcttacagactttaccagcagcatggacaaatctgagaaagtaaccaaagacgat
aaaaaagaggatacaattaagagggatcgtatcagaaacaaggatcgcccagcaatgcag
ctgtaccagcccggagcccgaagccggagcagattgtgtcagtatgaagacagtgctgca
aagcccccagatcagggagtggataagaaacaagagggtgagaccagtcacacgaaggaa
gaggagtga
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