Lonchura striata (white-rumped munia): 110480541 Help Entry 110480541         CDS       T05897                                  Symbol COL2A1 Name (RefSeq) collagen alpha-1(II) chain   KO K19719   collagen type II alpha Organism lsr  Lonchura striata (white-rumped munia) Pathway lsr04510   Focal adhesion lsr04512   ECM-receptor interaction lsr04518   Integrin signaling Brite KEGG Orthology (KO) [BR:lsr00001]  09130 Environmental Information Processing   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     110480541 (COL2A1)    04518 Integrin signaling     110480541 (COL2A1)  09140 Cellular Processes   09144 Cellular community - eukaryotes    04510 Focal adhesion     110480541 (COL2A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:lsr00536]     110480541 (COL2A1) Glycosaminoglycan binding proteins [BR:lsr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    110480541 (COL2A1) SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI VWC VWC2L_2nd Motif Other DBs NCBI-GeneID:  110480541 NCBI-ProteinID:  XP_021404237 LinkDB All DBs Position 29:complement(223953..>242669) Genome browser AA seq 1474 aa AA seqDB search LLLLCLAAAAAAQDRDLPEAGSCLQDGHRYSDKDVWKPEPCRICVCDTGTVLCDEIMCEE LRDCPSPEIPFGECCPICPTEQPSGQPGPKGQKGEPGDIKDVVGPRGPPGPQGPAGEQGQ RGDRGEKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGG AQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGD DGETGKPGKSGERGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGS PGENGSPGPMGPRGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGS KGEAGPTGARGPEGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGF PGPRGPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGA RGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGE PGLPGARGLTGRPGDAGPQGKVGPTGSPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE PGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGP PGESGKPGDQGVPGEAGTPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGA TGPAGPNGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGP PGPAGPNGEKGESGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGE PGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGN PGPPGPPGSAGKDGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGP QGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGE PGREGNPGSDGPPGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGA QGPMGPSGPAGARGMPGPQGPRGDKGEAGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGA AGPAGPSGPRGPPGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGP PGTGIDMSAFAGLGQPEKGPDPGRYMRADEAAPGLRPHDAEVDATLKALNNQIESIRSPE GSRKNPARTCRDIKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMATGETCVYPSPGSIPR KNWWSSKAKEKKHVWFAETINGGFHFSYGAEDLAPNTANIQMTFLRLLSTEGSQNITYHC RNSVAYLDEESGSLRKALLIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGRTVIEYR SQKTSRLPIVDIAPMDIGGPEQEFGVDLGPVCFL NT seq 4425 nt NT seq  +upstreamnt  +downstreamnt ctcctcctcctctgcctcgccgccgccgccgccgcgcaggaccgagacctccccgaggcc ggcagctgcctgcaggacgggcaccgctacagcgacaaggacgtgtggaagccggagccg tgccggatctgcgtgtgcgacacggggacggtgctgtgcgacgagatcatgtgcgaggag ctgcgggactgccccagccccgagatccccttcggagagtgctgccccatttgccccacc gagcagcccagcgggcagcctggccccaagggacaaaaaggtgaacccggtgacatcaaa gatgtcgtaggaccccgaggacccccgggcccacagggccccgcaggtgagcagggacag cgaggcgaccgcggcgagaagggcgagaagggcgcccccggtccccggggcagggatggg gagcccggaactccaggaaatcccggtccccccgggccccccggaccgccgggacccccc ggcctgggggggaacttcgcggctcagatggccgggggcttcgacgagaaggccggaggg gctcagatgggcgtcatgcagggacccatgggccccatgggaccccgcggcccccccggc ccctccggctcccccggtccccaaggattccaaggcaaccccggtgaacccggcgagccg ggcgctgctggtccgatgggtccccggggacctccgggacctcctggcaaacccggtgac gacggcgagaccggcaaacccgggaaatccggcgagcgcggcccccccggaccccagggc gctcgtggcttccctgggacccccggcctgcctggagtcaaaggccaccggggctacccc ggcctggacggcgccaagggagaggcgggagcgcctggagccaagggcgagtccggctcc ccgggcgagaacggctcccccggccccatgggtccccgcgggctgcccggagagcgagga cgcccgggcccctcgggcgctgcgggcgctcgtggcaacgacggcctcccgggcccggcc ggaccccccggtcccgtcggccccgcaggagcccccggcttccccggcgcccccggctcc aagggtgaagcgggtcccaccggagcgcgaggacccgagggtgcccaggggccccgcggg gaatccgggacccccggctcgcccggtcccgccggcgcccccgggaacccaggaaccgat ggcatccccggagcgaagggatcggcgggcgctccaggcatcgccggcgctccaggattc cccggcccccgcggcccacccggaccccagggagccaccggcccgctgggccccaaggga cagacgggcgagcccggcatcgcgggattcaaaggcgagcagggacccaagggagagacg ggccccgcaggaccccagggtgcccccggaccggccggggaggaaggcaagagaggagcc cgcggagaacccggagctgccggacctttggggccacctggagagaggggagctcctggc aaccgcggcttccccgggcaggacgggctggccggccccaagggggccccaggcgagcgc ggccccgctggcctggccggccccaaaggagccaccggcgaccccggacgccccggagag cccggcctgcctggagccaggggtctcacgggtcgccccggggacgctgggccccaaggc aaagtcggccccaccggttcccccggcgaggacggacgccccggaccccccggcccgcag ggggctcggggccaacctggcgttatggggttccctggtcccaaaggtgccaatggcgag cctggaaaagctggtgagaaaggacttcctggagcaccgggactgaggggacttcctggc aaggatggagagaccggagccgccggacccccaggacctgctggcccggcaggggagagg ggagagcaaggagcccctggcccctccggcttccaggggctgccagggccaccaggtccc cccggcgagagcggcaagcccggagatcagggcgttcccggagaagccggaacccccggg ctcgtgggtcccaggggcgagcgcggcttccccggcgagcgcggctctcccggcgcgcag ggcctgcaggggccccgcggcctccccggcacccccggcaccgacggacccaagggtgcc accgggcccgccggccccaacggcgcccagggacccccggggctgcaggggatgcccggg gagagaggagccgccggcatcgccggtcccaagggggacaggggagacgttggagagaag ggacccgagggagcccccggaaaggacggagctcgcggtctgaccggtcccatcggcccc cctggccccgctggccccaacggcgagaagggcgagtctggcccgcccggcccgtccgga gccgccggtgcccgcggtgccccgggagagcgcggagagcccggagcccccggccctgcc ggattcgccggacccccgggcgccgacggccagcccggagccaagggcgagcagggggag cccggccagaagggcgacgccggagcccccgggcctcagggtccctccggagctcctggg ccgcagggtcccacaggtgtcaccggtcccaaaggagcccggggcgctcagggacccccg ggagccaccggattccccggagccgccggacgcgtcggaccccctggccccaacggtaac cccggcccccccggaccccccggctccgcgggcaaggacggccccaagggcgcccggggc gacgcgggacccccgggccgagcgggggacccggggctgcagggccccgccggccccccc ggcgagaagggagagcccggcgaggacggccccgcgggtccggacggtccccccggtccc caggggctggcaggacagcgcggcatcgtggggctgccggggcagcgcggcgagcgcgga ttcccggggctgccgggaccctcgggagagcctggaaaacagggagcccctggatctgct ggtgaccggggaccccccgggcctgtgggaccgcccgggctgacagggccggcaggagag cccggcagggagggaaatcccggctctgacggacccccgggcagggatggggcagccgga gtgaagggcgatcgtggcgagactggccccgtgggtgctcccggtgctcccggcgctccc ggcgctcctggccctgtgggacccactggaaaacagggagacagaggagagacgggtgct cagggtcccatgggtccctccggccccgctggcgcccgggggatgccgggtccccagggg ccgcgcggtgacaaaggcgaggcgggcgaggccggcgagcgcggcctgaaggggcaccgg ggcttcaccgggctccaggggctgcccgggccccccggtccttctggagaccagggtgct gccgggcccgcgggtccctccgggccaaggggtccccccggccccgtgggcccttcgggc aaggacggctccaatgggatgcccggacccatcggcccccctgggccccgcgggaggagc ggcgagcccggcccggcgggcccccctgggaaccccggcccgcccgggccccccgggccc cccggcaccggcatcgacatgtcggcgttcgcggggctggggcagcccgagaagggcccc gaccccgggcgctacatgcgggcggacgaggcggcgccggggctgcggccgcacgacgcc gaggtggacgccaccctcaaggccctcaacaaccagatcgagagcatccgcagccccgag ggctcccgcaagaacccagccaggacctgccgagacatcaaactctgccaccccgactgg aagagcggcgattactggatcgaccccaaccagggctgcacgctggacgccatcaaggtc ttctgcaacatggccacgggggagacgtgcgtgtaccccagccccggcagcatccccagg aagaactggtggagcagcaaagccaaggagaagaagcacgtctggttcgccgagaccatc aacggcggcttccacttcagctatggcgctgaggacctggcgcccaacacggccaacatc cagatgaccttcctgaggctgctgtccaccgagggctcccagaacatcacctaccactgc cgcaacagcgtggcctacctggacgaggagtcgggcagcctgaggaaggcgctgctcatc cagggctccaacgacgtcgagatccgcgccgagggcaacagcaggttcacctacagcgtg ctggaggacggctgcacgaaacacacggggaaatggggcaggactgtcatcgagtaccgc tcgcagaagacctcgcgcctgcccatcgtggacattgcacctatggacattgggggaccc gagcaggagtttggggtcgacctcggccccgtctgcttcttgtaa

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