Lonchura striata (white-rumped munia): 110480804
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Entry
110480804 CDS
T05897
Symbol
TRIM45
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM45
KO
K12021
tripartite motif-containing protein 45
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lsr04121
]
110480804 (TRIM45)
Ubiquitin system [BR:
lsr04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110480804 (TRIM45)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filamin
zf-B_box
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
Invasin_D3
DUF4455
Laminin_II
DUF7337
Ig_GEX2_N
Motif
Other DBs
NCBI-GeneID:
110480804
NCBI-ProteinID:
XP_021404737
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All DBs
Position
1:89717947..89725605
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AA seq
523 aa
AA seq
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MSAPRCPRCAQPCASPRLLPCLHSLCEPCLRRLGPPGAARPVLCPLCDAELSLPAGGVGQ
LPPDCLAGSRGRAAAGCDLCADGAAAGRCLTCGLRLCRFCCRAHRRQKKTASHAVTELEN
TKDCSQAGKPLLCPSHPTEELQLFCEQCDQPVCRDCVLGRHRQHPCDFTGNVIHRHGDAL
RELLKSSQQHMDALEDVLSQVDEMGSAVRSRAEAVATEICLFARGYMKAIEEHRDRLLKQ
LEDLKVQKENLLHLQKAQLQQLLLDMRTGVEFTEHLLMSGSDVEILITKGVVSSRLTKLN
SVAYSTHPSVDDRIQFSPHERAGQCCGYEVFGAILNKVVDPARCTLHGEDLHSARQNQLS
GFTLLCKDTTGERMGRGGEAVRVTITHKDKRDCAVKPTVCDNGDGTYCISYNPEEPGLYA
VCVCVKGQHVQGSPFTLMVKHKFREHQGVFHCCTFCSSGGQKAARCACDGTMPGGYQGCG
HGHKGHPGCHHWSCCGQVKESSECLCGPPSDTSQRSLLRTVAL
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcgccgcgctgcccgcggtgcgcccagccctgcgcgtcgccgcggctgctgccc
tgcctgcactcgctgtgcgagccctgcctgcgccgcctcgggccgccgggcgccgcccgc
ccggtcctgtgcccgctgtgcgacgccgagctgtcgctgccggccggcggcgtggggcag
ctgccccccgactgcctggctgggagccgcggccgggccgcggccgggtgcgacctctgc
gccgacggggcggcggccgggcggtgcctgacctgcggcctccgcctctgccgcttctgc
tgcagggcgcacaggagacagaagaaaacagcctcccatgctgtgacagagctggagaac
accaaggattgcagccaggccgggaagcctctcctgtgcccctcccatcccacagaggag
ctgcagctgttctgcgagcagtgtgaccagcccgtgtgccgggactgcgttctgggcaga
caccggcagcacccctgtgacttcactggcaatgtcatccacaggcacggggatgccctg
cgggagctgctgaagagcagccagcagcacatggacgccctggaggatgtgctgagccag
gttgatgagatgggcagtgctgtccgcagtcgtgcagaggctgtggccacggagatctgc
ctgtttgccaggggctacatgaaagcgattgaagagcaccgggaccggctgctgaagcag
ctggaggacttgaaggtgcagaaggaaaacctgctgcacttgcagaaggcccagctgcag
cagctgctgctggacatgaggacaggcgtggagttcacggagcacttgctgatgagcggc
tcagatgtggagatcctcatcaccaaaggggtggtgtccagccgtctgacaaagctcaac
agcgttgcttacagcacccaccccagtgtggatgacaggatccagttctccccccacgag
agggcagggcagtgttgtggctatgaagtttttggggccattctcaataaagtggtcgat
ccagccagatgtactctgcatggggaagatctccacagtgcccgtcagaaccagctgagt
ggctttaccctgctgtgcaaggacactacaggggagcgcatggggcggggaggagaggct
gtgagggtcaccatcacccacaaggacaagagggactgtgcagtcaagccaacagtgtgt
gataatggtgatgggacctactgtatttcctacaaccctgaagagccaggcttgtatgct
gtctgcgtctgtgtgaaagggcaacatgtgcagggctctcccttcactctgatggtgaag
cacaagttccgggagcaccagggggtgtttcactgctgcacgttctgctccagcggaggc
cagaaagccgctcgctgtgcctgtgatgggaccatgccaggtgggtaccaaggctgtggc
catggacacaaaggtcaccctggctgccaccattggtcatgctgtggacaagtgaaggag
agctcagaatgtttgtgtgggccacccagtgacacctcacagaggagtttgctcaggaca
gtggcactctga
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