Lonchura striata (white-rumped munia): 110481032
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Entry
110481032 CDS
T05897
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03440
Homologous recombination
lsr03450
Non-homologous end-joining
lsr04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
110481032 (RAD50)
03450 Non-homologous end-joining
110481032 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
110481032 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
lsr03032
]
110481032 (RAD50)
03400 DNA repair and recombination proteins [BR:
lsr03400
]
110481032 (RAD50)
DNA replication proteins [BR:
lsr03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
110481032 (RAD50)
DNA repair and recombination proteins [BR:
lsr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
110481032 (RAD50)
BRCA1-C complex
110481032 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
110481032 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
SbcC_Walker_B
AAA_15
SMC_N
DUF2703
AAA_29
AAA_13
Motif
Other DBs
NCBI-GeneID:
110481032
NCBI-ProteinID:
XP_021405111
UniProt:
A0A218V2U5
LinkDB
All DBs
Position
13:complement(7570440..7589723)
Genome browser
AA seq
1312 aa
AA seq
DB search
MSRIEKMSILGVRSFGVEDKDKQIITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGKTFVHDPKVANETDVKAQIRLQFRDVNGEVMAVQRSMLCTQKGKTPEFKTLESVITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVLNNVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKALEALRQVRLKQSLKVKECQTELKYLKQNKEKAQEIQDHLSNREAQLAASKEN
VISIENQLEPLKSSLAVVEQNLTKVMRLDNEVKALESRKRQMEKDNQDLQQKMEKVFQGT
DEQLRDRYQNHQRIVKEKEKRLLDCKRDLDRVTKECQRFNSEKSELLIERGRLQLQADRH
QEHIVTRDSLIQSLAAQLELDGFEQAPFTERHIASFRRLVKDRQDRDTEAANRMMREFAQ
KETMKQKQIDDIRDKKTGLERTIDLKSDIQNKKQAELKNVKCELQQLEGFSDRISELDEE
IGKMEDELEKAERNSNVETLEQEVQTLQNEKINLDKALRKLDQEMEQLNLHTTTITQMEM
LKKDKAEKEDQIRKVKSRHSEELTSLLGYFPNKKQLEDWLHGKNKKINQTRDTLANLNKR
LASVEYDKTYASNELKKKEAQLSSHEAKLFDVCGSQDFDSDLNKLQDEIEKSSKQRAVLA
GATAVYSQFITQLTEENQSCCPVCQRVFQTEAELQDVISDLQSKLRLAPDKLKSTESELK
RKEKKRDEMMSLKPLRRTVVELQDKEIPDLRNKIQNANRDLTGLKGEIEEQESLLQTALS
EEEGAKARLQDITLMERYQTDIRDVERKIAQQEAKLLRVNLSRTVHQVSKEKQDKKHLWD
TVTSKIELNQKLKQDQQSQIQQLRSAVNDLKAEKLQIVSSMQRRRQLEEQTVELTTEVQS
LCREIKEAEEQVLPLDAKLDKLQQEKEELVNKRTASNKETQDKMSSINEKVKDIYKYVKE
IENYIQQGKEDYKKQKESELDEVNSRLAACEKQKEKISKEMEMTRQDIDTQKIQERWLED
NLTLRKRNEELKEVEDNIKQLMKEMGEMKVPQMKNEQKHLEEKIESLKRNHHVALGRQRG
FEEEIVRFRKELREPQFKDAEEKYRDMMIVMRTTELVNKDLDLYYKALDKAIMTFHSMKM
EEINKIIRDLWRSIYRGQDIEYIEIRSDADESVSATDKRRNYNYRVVMVKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCINCGILALDEPTTNLDRENIESLAHALVEIIKSRLHQR
NFQLLVITHDEDFVELLGRSEYVETFYRIKKNIDQCSEIIKCSVSSLGSYVH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggattgaaaaaatgagtatcctcggagtgaggagcttcggggtagaagataaa
gacaaacaaattatcactttctttagtccattaactattttggtgggaccaaatggtgca
ggaaaaacgaccatcattgaatgtcttaaatatatatccactggtgattttcctcctggc
accaaaggaaagacatttgttcatgatccaaaggttgccaatgaaaccgacgttaaagct
cagattcggttgcagttccgtgatgtcaatggcgaggtcatggctgtgcagcgctccatg
ctctgtacccagaaaggcaagactccagaatttaaaacactggaatctgtcattactaga
acgaagcatggtgagaaggtcagcctgagttccaagtgtgctgaaatagatcgggagatg
atcagcgcccttggtgtttccaaatctgtgcttaacaacgtcattttctgtcaccaagaa
gaatccaactggccattaagtgaaggaaaggctctgaaacaaaaatttgatgagatcttt
tcagcaacaaggtatatcaaagcactcgaagctctgcgtcaggtacgactgaaacaaagc
ttgaaagtgaaagagtgtcagacagaactgaaatatctgaaacagaataaagagaaagca
caggaaatccaggatcatctcagcaacagagaagctcaactggctgcttctaaggagaat
gtaatatcaattgagaaccagcttgagcctctaaagagctctctggcagtagttgaacag
aatctcacaaaagtaatgaggttggacaatgaagtgaaggccctcgagagcaggaagagg
cagatggaaaaagataatcaagatttgcaacagaagatggaaaaggtttttcaaggaaca
gatgaacaactaagggatagataccagaaccaccagagaatagtgaaggagaaggagaag
agattgttggactgtaagcgtgatttagatagagtcactaaagagtgccagagatttaac
agtgagaaatcagagctgcttattgaacgaggtcgtcttcaactgcaggcagatcgtcac
caggagcacattgtgaccagggattccttaattcagtctctggcagcacagctggaatta
gatgggtttgagcaagcacctttcacggaaaggcacattgccagttttcgcaggctggtg
aaggacaggcaggacagagatacagaagctgcaaatcgtatgatgagagaatttgcacag
aaagaaacaatgaaacaaaaacagatagatgacataagagacaagaaaactggattagaa
agaaccattgacctgaaatcagacattcaaaataagaaacaagcagagctgaagaatgtc
aaatgtgaattgcagcagttggaggggttttcagacaggattagtgagttggatgaggag
attggcaagatggaagatgaactggagaaggctgagagaaacagcaatgtagaaacactg
gaacaggaggtacagactctgcaaaatgagaaaataaacttggacaaagctctaaggaag
ttggatcaagagatggagcagttgaatctacacaccacaacaattacccaaatggagatg
ctgaagaaagacaaagcagagaaagaagatcagataagaaaagtcaagtcaagacattct
gaggaactaacatcactgctgggatactttcccaataaaaaacaacttgaagactggctt
catggtaaaaataaaaagattaatcagacaagggatactcttgcaaatctgaacaagcga
ttggcatcagtagaatatgataaaacttatgccagtaatgagctaaaaaagaaagaagcc
cagttgtccagtcatgaagcaaaactttttgatgtttgtggaagtcaagattttgacagt
gatctgaacaaacttcaagatgaaattgaaaaaagttccaaacagcgagctgtgcttgct
ggagccactgcagtttattcacagttcattacacaactgacagaggagaaccagtcttgt
tgtccagtttgccaaagagtttttcagacagaggctgaactgcaggatgtcatcagtgat
ctgcagtctaaactgcgtcttgccccagacaaactgaagtcaacagagtctgagcttaaa
agaaaagagaaaaaacgtgatgaaatgatgagtcttaaaccactgcggcgaactgtagtt
gaactccaagataaggaaattccagacctgaggaacaagatccagaatgcaaacagagat
ctaacaggcctgaagggtgagatagaagaacaggaatcactcctccagacagctttgtct
gaggaagaaggtgccaaagcccgtttacaggatataaccctgatggaaaggtatcagact
gatatcagggatgttgaacggaaaattgctcagcaggaggctaaactgctaagagtcaat
ttaagtagaactgtgcatcaagtaagcaaagaaaaacaagacaaaaaacacctgtgggat
acagttactagtaaaattgagttaaatcaaaaactcaagcaggaccagcaaagccagatt
cagcagctgaggagtgcagttaatgacctcaaggcagagaagctgcagattgtcagcagc
atgcagcgccggcggcagctggaggagcagactgtggagttaaccactgaggttcagtcc
ttgtgcagagagatcaaggaagcagaagagcaggtacttcctttggatgcaaagttagac
aaattgcagcaggagaaggaagaactagtgaataaaaggactgcaagtaataaagaaaca
caagacaagatgagtagcataaatgagaaagttaaagatatatacaagtacgtgaaagaa
attgaaaactatattcaacaaggaaaagaagactataaaaagcaaaaggagtctgaactt
gatgaagtaaattctcgtttggctgcctgtgagaaacagaaggaaaagataagtaaagag
atggaaatgacccgacaagatattgacactcaaaagatacaggaaaggtggctggaggat
aatctcactttgaggaagcggaatgaagagctaaaagaagttgaagacaatataaaacaa
cttatgaaggagatgggagaaatgaaagtcccccagatgaaaaatgagcagaaacatttg
gaggagaaaatagagtctctgaaaaggaaccatcacgttgctcttggccgccagcgtggg
tttgaggaggagattgttcgcttcagaaaggagctcagagagccacagttcaaagatgca
gaagaaaaatacagagacatgatgattgtcatgagaacaacagagctggtgaacaaagat
ctggacctttattacaaggctcttgataaagcaataatgacatttcatagcatgaaaatg
gaagaaattaacaaaatcattcgtgacctgtggcgaagcatttacagaggacaagatatt
gaatatatagaaattcgctctgatgcagatgagagtgtctcagccactgacaaaagaaga
aattacaattacagggtagtaatggtgaagggagatacagcactggatatgcgaggaaga
tgcagtgctgggcaaaaggtgcttgcttctctcatcattcgccttgctctagcagaaaca
ttctgtatcaactgtggcattctggccctggatgagcctacaaccaaccttgaccgagaa
aacatcgagtccctggcacatgctctggtagagataataaagagccgcttacaccaacgc
aactttcagctgctggtgattactcacgatgaagattttgttgaacttctgggccgttct
gagtatgtggaaacattctacaggataaagaagaacattgaccagtgctctgagatcatc
aaatgcagtgtcagttccctaggctcctatgttcattag
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