Lonchura striata (white-rumped munia): 110481081
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Entry
110481081 CDS
T05897
Symbol
DDX46
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110481081 (DDX46)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lsr03041
]
110481081 (DDX46)
Enzymes [BR:
lsr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110481081 (DDX46)
Spliceosome [BR:
lsr03041
]
Complex A
U2 snRNP components
U2 related factors
110481081 (DDX46)
Complex B
110481081 (DDX46)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
110481081
NCBI-ProteinID:
XP_021405223
UniProt:
A0A218V3R5
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All DBs
Position
13:9073117..9092260
Genome browser
AA seq
1043 aa
AA seq
DB search
MGRESRHYRKRSASRGRSGSRSRSRSPSDKRKREDRRSRSRDRDRRRERSRSRDKRRSRS
RDRKRQRRSRSRERERSRERRRSRSRDRRRSRSRSRGRRSRSSSPSKNRKAENRSRSKEK
TEGVEISKEKKKDKDDKEEEKDKDATTNAVATENFDQNKLEEEMRKRKERVEKWREEQRK
KAMENIGELKKEIEEMKQGKKWSLEDDDDDEEETAEGEKEGSEVEDEELDPLDAYMEEVK
EEVKKFNMRSVKGGGGSEKKTGPTVTKVVTVVTTKKAAAESEKKKGELMENDQDAMEYSS
EEEEVDLQTALTGYQTKQRKLLEPVDHGKIEYEPFRKNFYVEVPELAKMTQEEVNVYRLE
LEGITVKGKGCPKPIKTWVQCGISMKILTALKKHGYEKPTPIQTQAIPAIMNGRDLIGIA
KTGSGKTIAFLLPMFRHIMDQRALEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRV
VCVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLAANNGRVTNLRRVTYVVLDEADRMFD
MGFEPQVMRIVDNVRPDRQTVMFSATFPRAMEALARRILSKPIEVQVGGRSVVCSDVEQH
VIVIEEENKFLKLLELLGHYQEKGSVIIFVDKQEHADGLLKDLMRASYPCLSLHGGIDQY
DRDSIINDFKNGTCKLLVATSVAARGLDVKQLMLVVNYSCPNHYEDYVHRAGRTGRAGNK
GYAYTFITEDQARYAGDIIKALELSGNPIPPDLEKLWADFKDQQKAEGKLIKKSSGFSGK
GFKFDETEQALANERKKLQKAALGLQDSDDEDTAVDIDEQIESMFNSKKRVKDMAAPGTS
NAPTPSAGNAEKLEIAKRLALRINAQKNLGAEAQVMVPFHFKDVMQQATNAILRGGTIQA
PTVSAKTIAEQLAEKINAKLNYVPIEKQEEEKQDGGQNESFKRYEEELEINDFPQTARWK
VTSKEALQRISEYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAVQKAKAEITRL
IKEELIRLQNSYQPTNKGRYKVL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgggccgcgagtccaggcattaccggaagcgctctgcgtcccgggggcgctccgggagc
cgttcccggagccgttccccgtcggacaagaggaagcgcgaggacaggcgctcccggagc
cgggaccgggaccgcaggcgggagaggtcgcgcagcagggacaagagaaggtctcgctcg
cgggacaggaagcgtcaaagacgttcaaggagcagagaaagggaacggagccgagagagg
agacgatcccggagccgagacaggaggcgctcaaggagcaggagtagagggagacggtcg
cgatcctccagtccaagcaagaacaggaaagcagaaaacagatcaagatctaaagaaaag
acagaaggtgtggaaatctctaaagaaaagaaaaaagacaaagatgacaaagaggaagag
aaagataaagatgctaccacaaatgctgtggccactgagaattttgatcagaacaaacta
gaagaagaaatgagaaaacgaaaagaaagagtggagaaatggagggaagaacaacgcaag
aaggcaatggaaaacataggagagctaaaaaaagaaattgaagagatgaaacaggggaaa
aaatggagtttagaagatgatgatgatgatgaagaggaaactgcagaaggagaaaaagaa
ggcagtgaggttgaagatgaggagttagatcctttagatgcttatatggaagaagtaaaa
gaagaggtcaagaagttcaatatgagaagtgtgaaaggtggaggtgggagtgaaaagaaa
actggaccaactgttaccaaggtggttactgtggtgacaaccaaaaaggcagctgctgag
tcagaaaagaagaaaggggaactcatggagaatgaccaagatgcaatggagtattcctca
gaagaggaggaagttgaccttcagactgccctgactggctatcagaccaagcagagaaag
ctgctagaaccagtggatcatggaaagatagaatatgaacctttcaggaaaaacttctat
gttgaagtaccagaactagctaaaatgactcaagaagaggtcaatgtatacaggctggag
ctggaaggaattacagtcaagggaaaaggctgtcccaaaccaataaaaacctgggtacaa
tgtggtatttctatgaagattctcactgccctcaaaaaacatggctatgaaaagcccact
ccaattcagacccaggctatcccagcaattatgaacggacgggatttgattggcattgct
aaaacaggaagtggaaaaactattgcatttctgttgcccatgttcagacacattatggat
cagagagcattagaagaaggagaaggtcccatagctgtcattatgacacctacacgtgag
ttggctttgcagattaccaaggagtgcaagaaattctccaagacacttgggcttcgagtt
gtctgtgtttatggaggaacaggaatcagtgaacagatagctgaactcaaaagaggtgct
gaaattattgtttgcacacctggacgtatgattgacatgttagcagctaacaatggacgg
gtgacaaacctgcgtagagtcacgtacgttgtacttgatgaagctgacagaatgtttgac
atggggtttgagcctcaggtcatgcgcattgtagacaacgtcaggcctgaccgtcagact
gtcatgttctctgccactttccccagagctatggaggccctggctcgcaggatcctcagc
aaacctatagaggtgcaggttggaggcagaagtgttgtctgttctgatgtggagcaacac
gtgattgtcatagaagaggagaacaaatttctgaagttactggagctactgggacattat
caggagaaaggatctgttatcatatttgtagataagcaagaacacgctgatgggttattg
aaagatttaatgagggcctcttatccttgcttgtctctccatggaggtattgatcagtat
gacagggacagcatcattaatgacttcaagaatggaacctgcaaacttctggtggccaca
tctgtagcagccaggggcttggatgtgaagcagctgatgctggtggtcaattacagctgt
cccaaccactatgaggactacgtgcaccgagccggccgcactgggcgagctggcaacaaa
gggtatgcatatacattcattactgaggatcaggcacgttatgctggtgatatcattaag
gctttggaattgtctgggaatccaattcctcctgatctggagaagctctgggctgacttt
aaagaccaacagaaagctgagggaaagttgattaaaaaaagcagtggattctctggcaaa
ggttttaaatttgatgaaacagaacaggctttggctaatgaaagaaagaagctacaaaaa
gcagctcttggcttgcaagattcagatgatgaagatacagctgttgatattgatgaacaa
attgaaagcatgttcaattcaaagaaaagagtaaaagacatggcagcaccaggaacatca
aatgctcctacaccatcagctgggaatgcagaaaaattggaaattgctaaaagattggct
ttgagaatcaatgcccagaagaatcttggagcagaggcacaagtcatggttcccttccac
tttaaggatgtgatgcagcaggctacaaatgctatcctgagaggaggcacaatccaagct
cctaccgtgtctgccaaaaccattgcagaacaactggctgaaaagatcaatgccaagctc
aattatgtacccatagagaagcaagaggaagagaaacaggatggaggacagaatgaatcc
ttcaagagatatgaagaggaattagagatcaatgacttcccacagactgccagatggaaa
gttacctccaaagaagcactgcagagaatcagtgaatattctgaagctgccattacaatc
agaggaacttacttccctccaggcaaagaacccaaagaaggagaacgaaagatttatttg
gctatagaaagtgccaatgaacttgctgtacagaaagcaaaggcagaaatcacacgactt
ataaaagaggagctcatcagattgcaaaattcttaccaaccaaccaacaaaggaagatac
aaagttctatga
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