Lonchura striata (white-rumped munia): 110481192
Help
Entry
110481192 CDS
T05897
Symbol
DICER1
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lsr03036
]
110481192 (DICER1)
Chromosome and associated proteins [BR:
lsr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
110481192 (DICER1)
microRNA pathway
RISC loading complex
110481192 (DICER1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
ResIII
DEAD
Helicase_C
Amidoligase_2
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
110481192
NCBI-ProteinID:
XP_021405357
LinkDB
All DBs
Position
5:14677909..14744843
Genome browser
AA seq
1921 aa
AA seq
DB search
MKSPALQSLSMAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNT
IVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNGKRTVFLVNSANQVAQQVSAVRTHSDLK
VGEYSSLEITESWTKEKWNQEFSKHQVLVMTCHVALTVLRNEYLSLSNINLLVFDECHLA
IQDHPYREIMKICEDYPSCPRILGLTASILNGKCDPAELEEKIQKLEKILKSNAETATDL
VVLDRYTSQPCEIVVDCGPYTDKSGLYGRLLKELDEALAFLNDCNISVHSKERDFTLISK
QILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTFLRKIHALCE
EHFSPASLDLKFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDE
DEEIEEKEKPETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFIT
GHGIGKNQPRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLP
TEYRSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDASETE
TEPVVDDDDVFPPYVLRPDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTWELPD
HTFYSTLYLPINSPLRASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMPVGKETV
KYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTP
LPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSL
QMLELITRLHQYIFSHILRLEKPALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDI
EKSEARTGIPSTQYTKEMPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKF
PSPEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKR
KAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGV
GVKSLPADFRYPNLDFGWKKSIDSKSFISLPNSSVVENENYCKHSTIVVPENAAHQGANR
TSSAENHDQMSVSYRTLLNESPSKLQIDVSVELTAINGVSYNKNLANGNCDLVNRDFCQG
NQLNYCRQDIPVQPTTSYPIQNLYNSENQPKPSNECTLPSNKYLDGNANRSTSDGCPIMA
VTTSTSKAINLSKDRADYEKSPCSGYSSKTLGPNPGLILQALTLSNASDGFNLERLEMLG
DSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVN
WLPPGYIVNQDKSNTDKWEKDEMTKENMLANGKLDDYNDDGENENLMWRLPKEETDFEDD
FLEYDQEHIKFIDNMLMGSGAFVKKISLSHFATTDSNYEWKAPKKSSMGNVQCSSDFDDF
DYSSWDAMCYLDPSKAVEEDDFVVGFWNPSEENCGVDAGKQSISYDLHTEQCIADKSIAD
CVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKKTDWEGTLCATRENCNSEQKNLSPNS
VAASVVNSEPSLCKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKA
YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN
NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEED
IEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEME
PETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVPN
S
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagccctgctttgcaatccctcagcatggcgggactgcagctcatgacccctgct
tcctccccaatgggtccattttttggactaccatggcaacaagaagcaattcatgataac
atttacacgccaagaaaatatcaggttgaactgcttgaagcagctttggatcataataca
atagtctgcttaaacactggctcagggaagacttttattgcagtactactcactaaagag
ctgtcctatcagatcaggggagatttcaacaaaaatggaaagagaactgtgttcttggtc
aactctgcaaatcaagttgctcaacaagtgtcagctgtcaggacacattcagaccttaaa
gtgggagagtattcaagtttggagataactgaatcatggacaaaagagaaatggaatcag
gagttctctaagcatcaggttctggttatgacatgtcatgttgctttgactgttttgaga
aatgagtatttatccctgtcaaatattaatcttctggtgtttgatgagtgccatcttgca
atccaggatcatccataccgtgaaattatgaagatctgtgaggattatccatcatgtcct
cgaattttgggattaacggcttccattttaaatgggaaatgtgatcctgctgagttagag
gagaagatccagaaactggagaaaattctgaagagcaatgctgaaactgcaactgatttg
gtggtcttggacagatatacttctcagccatgtgagattgttgtagactgtggaccatat
actgacaaaagtgggttgtatggaagattattaaaggaattggatgaagcacttgctttc
ctaaatgactgcaacatatctgtacattcaaaagaaagagattttaccttaatttctaag
cagatattgtcagactgtcgagctgtgttggttgttctgggaccgtggtgtgcagataag
gtagctgggatgatggtgagagagctgcagaagtatatcaaacatgaacaagaggagctg
cacaggaaatttttattgtttacagacactttcctaaggaaaatacatgcactctgtgaa
gagcacttctcgcctgcctcacttgacctgaaatttgtgaccccaaaagtaataaagctg
cttgaaatcttgcgcaaatacaaaccatatgaacggcagcagtttgaaagtgttgaatgg
tataacaataggaatcaggataattacgtgtcttggagtgattctgaagatgatgatgag
gatgaagaaattgaggagaaagagaagccagagactaatttcccatctccctttactaat
attttatgtggaattatttttgtggaaagaagatacacagcagttgttctaaataggttg
ataaaagaagctggcaagcaagatccagaactggcttacatcagtagcaattttataact
ggacatggcattggcaagaaccagcctcgtaacaagcagatggaagtagaatttagaaaa
caggaagaggttcttagaaaatttcgagcacatgagaccaacctacttattgctactagt
attgtggaagaaggtgttgacataccaaaatgcaatttggtggtgcgttttgatttgccc
acagagtaccgttcctatgtgcagtcaaaaggaagagctagagcaccaatttccaattac
attatgttagcagatacagacaaaatcaaaagttttgaagaagatcttaagacatacaaa
gcaattgagaagatcctccgaaacaaatgttcaaaatctgttgatgccagtgaaactgaa
actgaacctgttgttgatgatgatgatgtctttccaccctatgtattgaggccagatgag
aacagtccgagggttactattaacactgctattggacacataaataggtactgcgctaga
ttaccaagtgatccatttacacacctggctcccaagtgtaagacctgggaactacctgac
cataccttttactctactctctacctgccaatcaactcacctcttcgagcttcaattgtt
ggccctccaatgagttgtgcaagattggctgagagagttgtcgctcttatttgctgtgaa
aaactgcacaaaattggtgaactggatgatcatttgatgccagttggtaaagaaacggtt
aaatatgaggaggaacttgatttacacgatgaagaagaaaccagtgttccaggaaggcca
ggctctacgaaacgaagacagtgctatcctaaagctattccagagtgtttgagggatagt
tatcccaaacccgatcagccctgttacttgtatgtaataggaatggtgttaacgactcct
ctacctgatgagctcaacttcaggagacgaaagctatatcctcctgaggatacaacaaga
tgttttggcatattgacagccaaacctatacctcaaattcctcactttcctgtgtatact
cgctctggagaggttacaatatccattgagcttaagaaatctggttttactctgtctctg
caaatgcttgagctgatcacacgactccaccagtacattttttcacatattcttcgtctt
gagaaacctgcactagagttcaaacctacagaagctgattcagcctattgtgttctacct
ctaaatgttgttgatgactccagcactttggacattgactttaagtttatggaagacatt
gagaaatctgaggcacgtacaggcattcccagtacacaatatacaaaagaaatgcctttt
attttcaagttagaagattatcaagatgcagttatcattccacgataccgaaattttgat
cagcctcatcgattctacgtagctgatgtatacactgatcttactccactcagtaaattc
ccttcccctgaatatgaaacttttgctgaatattataaaacgaagtataatcttgacctt
accaatcttaaccagccactgctggatgtggaccacacatcttcaagacttaatcttttg
actcctcgccatttgaatcagaagggaaaagcacttccactaagcagtgctgagaagagg
aaagcaaagtgggaaagtttgcagaataaacagatactggttcctgagctctgtgctata
catcctattccagcatcattgtggagaaaagcagtttgcctccccagcatcctttaccgc
ctgcactgccttttgacagcagaggaactaagagctcaaacagccactgatgctggtgta
ggagttaaatcacttcctgcagatttcagatatcctaacttggactttggatggaaaaag
tctattgacagcaagtccttcatctctcttcctaactcctctgtagtagagaatgaaaat
tactgtaagcacagcacaattgtagtccctgaaaatgctgcacatcaaggtgctaataga
acctcttctgcagaaaaccatgaccaaatgtctgtgagttacagaacattgctcaatgag
tcacccagtaaactccaaattgacgtctcggtagaacttacagcaattaatggtgtttct
tataataaaaatcttgccaatggcaattgtgatttagttaacagagacttttgccaagga
aatcagctgaattactgcaggcaggacatacctgtacaaccaactacctcatatcccatt
cagaatttatacaacagtgagaaccagcccaagcccagcaatgaatgtactctaccgagt
aataaataccttgatggaaatgctaacagatctacctcagatggatgccccataatggca
gtgaccaccagtacttcaaaagctattaatctttcaaaagacagagcagattatgaaaag
agcccttgcagtgggtactcctcaaaaactctcggtcctaatcctggtctcattcttcaa
gctttgactctttcaaatgctagtgatggatttaacctggagcggctagagatgcttggt
gattcatttttaaagcatgccatcactacatacttgttttgcacttaccctgatgctcat
gagggacggctgtcatacatgagaagcaaaaaagtcagcaactgtaacttgtatcgtctt
ggaaaaaagaagggactgccaagtcgcatggtggtgtcgatttttgatcccccggtcaat
tggcttcctcctggttacatagtaaatcaggacaagagcaacactgacaagtgggagaaa
gatgaaatgacaaaggaaaacatgttggctaatggtaaacttgatgattataatgatgat
ggagagaatgaaaacctaatgtggaggttgcccaaggaagaaacagactttgaagatgat
tttctggagtatgatcaggagcatatcaaattcattgataatatgttaatgggatcaggg
gcttttgtgaagaaaatttcactctcacactttgcaaccactgattcaaactatgaatgg
aaagcacccaaaaagtcatccatgggtaacgttcagtgttcatcagattttgatgatttt
gactatagctcttgggatgctatgtgctatctggatcctagcaaggctgttgaagaggat
gattttgtagtgggcttctggaatccatcagaagaaaactgtggtgttgatgcaggaaaa
cagtcgatctcctatgacttgcatacagagcagtgtattgctgacaagagcattgcagac
tgtgtggaagccctgttgggctgctatctgaccagctgtggtgaaagagctgctcagctt
ttcctgtgttcattggggctcaaggtgctccctgtaattaaaaagactgattgggaaggc
actctgtgtgccaccagagagaactgtaacagtgagcagaaaaacctttcaccaaattct
gttgctgcttctgtagttaattcagaaccttctctgtgtaaagacctggagtatggctgt
ttgaagattccaccaaggtgtatgtttgatcacccagatgctgaaaaaaccttaaatcac
cttatttctggttttgaaaactttgagaagaaaataaattacagttttaagaacaaggct
tatcttcttcaggcatttactcatgcctcttaccattataataccattactgattgttac
cagcgcttagaattcctgggagatgcaattttggactacctcataaccaagcacctttat
gaagacccacggcaacactctccaggagttcttactgacctacgatctgctctagtcaat
aataccatttttgcatcattagctgtaaagtatgactaccacaagtacttcaaagctgtc
tctcctgaactgtttcatgttattgatgactttgtgcagtttcaaatggaaaagaatgaa
atgcaaggaatggattctgagctcagaagatctgaagaagatgaagaaaaagaggaagac
attgaagtaccaaaggccatgggggatatatttgagtcccttgctggtgccatttatatg
gatagtggaatgtctttggaaatggtttggcaagtgtactatccaatgatgaggccacta
atagaaaaattttctgctaatgtgccccgttccccagtgcgagagctgctggaaatggag
ccagagacagccaaatttagtcctgcggaaagaacttacgatggaaaggtcagagttaca
gtggaagttgtaggaaagggaaagtttaaaggtgttggcagaagctacaggattgccaaa
tctgcagctgcaagaagagcactacgaagcctcaaagcaaatcaacctcaggtcccaaac
agctga
DBGET
integrated database retrieval system
