Lonchura striata (white-rumped munia): 110481436
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Entry
110481436 CDS
T05897
Symbol
FDFT1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr00100
Steroid biosynthesis
lsr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
110481436 (FDFT1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
lsr01006
]
110481436 (FDFT1)
Enzymes [BR:
lsr01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
110481436 (FDFT1)
Prenyltransferases [BR:
lsr01006
]
Terpene biosynthesis
Squalene/phytoene synthase
110481436 (FDFT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
SCC3_C
Motif
Other DBs
NCBI-GeneID:
110481436
NCBI-ProteinID:
XP_021405714
UniProt:
A0A218U8T0
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Position
3:107766544..107778175
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AA seq
418 aa
AA seq
DB search
MELLRKWLGHPEDIYHLLRFKMGGYRAVMPRMDTDSLGCGLRTCYRYLNQTSRSFAAVIQ
ALDGELRHAVCIFYLVLRALDTVEDDMSIPLDVKVPMLHEFHSHLYQPDWKYTESKEKDR
QVLEDFPTISMEFRNLSKVYQDVISDICHKMGVGMAEFLEKKVDSEREWDKYCHYVAGLV
GIGLSRLFSASELEDSIVGQDTDLANSMGLFLQKTNIIRDYLEDQLEGREFWPREVWSRY
AKKLSDFAKPENIDMAVQCLNELITNALQHVPDVLTYLSRLKNQSVFNFCAIPQVMAIAT
LAACYNNQQVFRGVVKIRKGQAVTLMMDATNIQAVKAIMYQYVEEIYQKIPSTDPSSNKT
QQVIASIRAVSLPGSPMASRHHYSPIYLSCAMLLAALSWQYLSTLSKATEEYVQAGDN
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atggagctgctgcggaaatggctgggccaccccgaggacatctaccacctgctgcgcttc
aagatgggcggctaccgcgccgtcatgccgcggatggacacggactcgctgggatgtggc
ctccgcacctgctaccgctacctcaaccagaccagccgcagcttcgccgccgtcatccag
gctctggatggagagctgcgacatgcagtgtgtatattctacctagttctccgtgccctg
gacactgtagaggatgacatgagcatccctttggatgtcaaggttccgatgctgcacgag
ttccactcccatctctaccagccagactggaagtacacagagagcaaggagaaggacagg
caggtgctggaagacttcccaacgatctccatggagttcagaaacctgtccaaggtctac
caggatgtgatttcggatatttgtcacaagatgggcgttgggatggcagagttcttggag
aaaaaggtggattctgagcgtgagtgggataagtattgtcactacgttgctgggctggtg
gggattggcctttcccgtctcttctctgcatcagagctggaagattccatcgtggggcag
gacacagatctggcaaactccatgggcctattcctacagaaaaccaacatcatccgtgac
tatctggaggaccagctggagggaagggagttctggcccagagaggtttggagcagatat
gccaagaagctctcggactttgccaagccagagaacatcgacatggccgtgcagtgcctc
aatgagctcatcaccaacgccctccagcacgtccctgacgtcctcacctacctgtcccgc
ctcaaaaaccaaagcgtcttcaacttctgcgctatcccccaggtgatggccattgccacg
ctggctgcctgctacaacaaccagcaggtgttcaggggggtggtgaagatccgcaagggc
caggctgtcaccctcatgatggatgccaccaacatccaagctgtcaaagccatcatgtac
cagtatgtggaagagatctaccagaagatcccgagcacggacccctcgtccaacaagacg
cagcaggtcatcgcgtccatccgcgccgtcagcctgcccggcagccccatggcctcccgc
caccactactcccccatctacctgtcctgtgccatgctcctggcagccctgagctggcag
tacctcagcaccctctccaaggccaccgaggagtacgtgcaggcaggagacaactga
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