Lonchura striata (white-rumped munia): 110481542
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Entry
110481542 CDS
T05897
Symbol
CACNA1H
Name
(RefSeq) voltage-dependent T-type calcium channel subunit alpha-1H
KO
K04855
voltage-dependent calcium channel T type alpha-1H
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr04010
MAPK signaling pathway
lsr04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
110481542 (CACNA1H)
04020 Calcium signaling pathway
110481542 (CACNA1H)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
lsr04040
]
110481542 (CACNA1H)
Ion channels [BR:
lsr04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
110481542 (CACNA1H)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
PKD_channel
Serglycin
Motif
Other DBs
NCBI-GeneID:
110481542
NCBI-ProteinID:
XP_021405924
LinkDB
All DBs
Position
14:complement(11835607..11998634)
Genome browser
AA seq
2366 aa
AA seq
DB search
MSAGESREPPRPAEVRVPITALPAPRRPAEQPPEDAGSGSGSGSGSGSGSGSGSPGREPP
AELGSEEEEQVPYPALAPTAFFCLKQTTRPRSWCLRLVCNPWFEHVSMLVILLNCVTLGM
FQPCEDVECQSERCTILEAFDDFIFAFFAVEMVIKMVALGIFGQKCYLGDTWNRLDFFIV
MAGMMEYSLDGHNVSLSAIRTVRVLRPLRAINRVPSMRILVTLLLDTLPMLGNVLLLCFF
VFFIFGIVGVQLWAGLLRNRCFLDRNFAMTYNLTFLHPYYRPDEAEENPFICSSHRENGM
QRCSNIPSRKESKVECTLSMESYSPSLASPEPSRNSCINWNQYYNICMAGDVNPHNGAIN
FDNIGYAWIAIFQVITLEGWVDIMYYVMDAHSFYNFIYFILLIIVGSFFMINLCLVVIAT
QFSETKQRENQLMQEQRARYLSNDSTIASFSEPGSCYEELLKYICHIFRKVKRRTIRLYN
NWQSKRRKKVNPNSGGGQSQRGRRRITSIHHLIHHHHHHHHHHYHISNGSPRGPRANPEL
CELELQVMKPGRQLTLPPPASPRPPGPAVHSIYHADCHVEGPPGACRATSSPAGGKAAGL
GGHGSMNYPTILPSPGGRGGPAALAKGKRSGSSPVAAGSSPGNLGLDSYGKLQQLVGEHA
LRRTPSRLSGLSAAGALPSAGGPGLSCELQDCPFCASLLDDPEFALSDSDSNGDSDSNGV
YEFTQDLRHGDHRDQLQQQRGRRRRKKKKAKERNKVVKLWKAFGTKLKRIVESKYFNRGI
MIAILINTLSMGIEYHEQPDELTNALEISNIVFTSMFALEMLLKLLAFGIFGYIKNPYNI
FDGIIVVISVWEIIGQSDGGLSVLRTFRLLRVLKLVRFMPALRRQLVVLMKTMDNVATFC
MLLMLFIFIFSILGMHLFGCKFSLKTDTGDTVPDRKNFDSLLWAIVTVFQILTQEDWNVV
LYNGMASTSSWAALYFVALMTFGNYVLFNLLVAILVEGFQAEGDANRSDTDEDKTSANFE
DEFEKLKDLRATEMKMYSLAVTPNGHLEGRGAMPPPIIMRTAATPMPTPKCSPHLEALHG
LGDSRRGSNASLDPTGYDQKSLSSLRSSPCANWATSSTWGSRRSSWNSLGRAPSLKKKNQ
SGERESLLSGEGKGSTDDDSDDAKSSTPSRPSPPRRAESLELPELLRVPSVRQLGLGPAE
LRGCNGKTGHGPAEFFLRVDGHKEDALDYEDDVEDSYCYRIRKALEPYKPQWCKTHEDWS
LYLFSPQNRFRVMCQKVIAHKMFDHVVLVFIFLNCITIALERPDIDPLSTERIFLSVSNY
IFTAIFVAEMMVKVVALGFFSGENTYLQSSWNVLDGVLVFVSIIDIIVSMASAGGAKILG
VLRVLRLLRTLRPLRVISRAPGLKLVVETLISSLRPIGNIVLICCAFFIIFGILGVQLFK
GKFYYCDGPDVKNITTKADCTNAHYKWVRRKYNFDNLGQALMSLFVLSSKDGWVNIMYDG
LDAVGIDQQPIQNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQEAEEARRR
EEKRLRRLEKKRRKAQRRPYYADYSPARRYIHSLCTSHYLDLFITFIIGVNVITMSMEHY
NQPKSLDEALKYCNYVFTIVFVFEALLKLVAFGFRRFFKDRWNQLDLAIVLLSIVGITLE
EIEMNAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLL
FFIYAALGVELFGKLDCSEENPCEGLSRHATFTNFGMAFLTLFRVSTGDNWNGIMKDTLR
ECTREDKHCLSYLPVISPVYFVTFVLIAQFVLVNVVVAVLMKHLEESNKEAKEDAEMDAE
IELEMSRGGGGSRALHGNLEHAKGKQQALGAAASLRAQDSQNLLAVRKISVSRMHSLPND
SYMFRPVAPAAAPLPLHEVEMETYPCKAQRGSITSIRSQPVAGSSSLRVPSEALPAAARC
PGREGRQRWRGPAPHGTPRSPALSKLLCRQEAVQTDSVDGQTPERKDSLQAEPGEPQPPA
KQPPSSLTSSPLHSPLPATPPRSPPSSPHRPLGALARKHTCGQHGVPSRPPSPTEGCQGE
PSDLADEEVRHINSSAKDWAEERSDPGSRSTSPFASPAPSPAPLKNCSTSSLSRKEKDLK
KFYSTDSKGFLSKPSWADEQRRHSIEICPSGSAPDRGFQEPAEDKQRLPGHVPPEAEHIH
GARRKKKMSPPCISIDPPMEDDGAAAPRSKASENTLLRRRTPSCEFPAYRESLELPESRG
EHLGIPNFSFEQLDGGSLSSLSELLDSAQSTPASVGSRPDAELQKQEHLQTERGKELLGT
AAKSPLRKQGLGPVTAATGDGAGDPV
NT seq
7101 nt
NT seq
+upstream
nt +downstream
nt
atgagcgccggcgagagccgggagccgccgcgcccggccgaggtgcgggtgcccatcacg
gcgctgccggcgccgcgccgccccgccgagcagccgcccgaggatgccggcagcggctcc
ggcagcggctccggcagcggctccggctccggcagcggctcccccggccgagagccgccc
gccgagctgggctccgaggaggaggagcaggtgccttacccggcgctggcacccaccgcc
ttcttctgcctcaagcaaaccacccgcccgcgcagctggtgcctcaggctggtctgtaac
ccctggttcgagcacgtcagcatgctggtgatcctgctcaactgcgtcaccctgggcatg
ttccagccctgcgaggacgtggagtgccagtcggagcgctgcaccatcctggaggcattt
gatgacttcatttttgccttctttgccgtggaaatggtcatcaagatggtggccctgggc
atcttcgggcagaagtgttaccttggagacacctggaatcgcctggacttcttcatcgtc
atggcagggatgatggaatattccctggatggacacaacgtcagcctctccgccatccgc
accgtgcgcgtcctgcgcccgctgcgcgccatcaacagggtcccaagcatgaggatcctg
gtcacgctgctgctggacactctgcctatgttaggcaacgtcctcctgctctgcttcttc
gtcttcttcatctttgggattgtcggggtccagctctgggcagggctgctgaggaaccgg
tgcttcctagacaggaattttgccatgacgtacaacctgaccttccttcacccctactac
cggccggacgaggcggaggagaaccccttcatctgctcctcgcaccgggagaacggcatg
cagaggtgctccaacattcccagcaggaaggagtccaaggtggagtgcaccctgagcatg
gagtcctacagccccagcctggccagccccgagcccagcaggaactcctgcatcaactgg
aaccagtactacaacatctgcatggccggggacgtcaacccccacaacggggccatcaat
tttgataatattggatatgcctggattgctatttttcaggtgataaccctggaaggatgg
gtggacatcatgtattatgtgatggacgcacactctttttacaattttatatattttata
ttgcttatcatagttggctctttcttcatgatcaacctgtgcctggtggtgatcgccacc
caattttcggagaccaagcagcgggagaaccagctgatgcaggagcagcgggcgcgctac
ctgtccaacgacagcaccatcgccagcttctcggagccgggcagctgctacgaggagctg
ctcaagtacatctgccacatcttcaggaaggtgaagagaaggaccatccgcctctacaac
aactggcagagcaaacgccgcaaaaaggtcaaccccaacagcggcggcgggcagagccag
cgcggcaggaggagaatcacctccatccaccacctgatccaccaccaccaccaccaccac
caccaccactaccacatcagcaacgggagcccgcgggggcctcgcgccaaccccgagctc
tgcgagctggagctgcaggtgatgaagccgggccggcagctgacgctgccgccgcccgcc
tcgcccaggccgccgggccccgccgtgcacagcatctaccacgccgactgccacgtggag
ggacctcccggcgcctgcagggccaccagcagcccggcgggcggcaaagcggccgggctg
ggcggccacggcagcatgaactaccccaccatcctgccctcccccggtggcaggggcggc
ccggcggcgctggccaaagggaagaggagcgggagctctccggtggccgcggggagcagc
ccggggaacctgggcctggattcctacgggaagctgcagcagctggtgggagagcatgct
ctccgccggacgcccagccggctgtcggggctgagcgcggccggggctctgcccagcgct
ggtggcccggggctgagctgcgagctgcaggactgtcccttctgcgccagcctcctggac
gaccccgagttcgccctcagcgactccgacagcaacggcgactccgacagcaacggcgtc
tacgagttcacgcaggacctgcggcacggggaccaccgggaccagctgcagcagcagcgg
ggcaggaggaggaggaagaagaagaaagccaaggagaggaacaaggtggtgaagctctgg
aaggcgttcggcaccaaactcaagaggattgtggagagcaaatacttcaaccgcgggatc
atgatcgccatcctcatcaacaccctcagcatgggcatcgagtaccacgagcagccagac
gagctgaccaacgccttggagatcagcaacatcgtcttcaccagcatgtttgccctggag
atgctcctgaaactcctggcctttggcatctttggctacatcaagaacccctacaacatc
tttgacgggatcatcgtggtgatcagtgtctgggagatcatcgggcagtcggacgggggc
ctgtccgtgctcaggacgttccggctgctccgcgtgctgaagctggtgcgcttcatgcct
gccctgcgccgccagctcgtggtgctcatgaagaccatggacaacgtggccaccttctgc
atgctgctcatgctcttcatcttcatcttcagcatccttggcatgcatctttttgggtgc
aagttcagcctgaaaaccgacaccggagacaccgttccagacaggaagaattttgattcc
ttactctgggccattgtgaccgtgttccagatcctgacgcaggaggactggaacgtggtg
ctctacaacgggatggcctccacctcctcctgggccgccctctacttcgtggccctgatg
acctttggcaactacgtcctcttcaacctcctggtggccatcctggtggaaggattccag
gcagagggagatgccaacaggtcagacacagatgaggacaagacatctgccaacttcgag
gatgagtttgagaagctgaaagacctcagagcaacagagatgaagatgtactcgctggct
gtcacccccaacgggcacctggagggcaggggggccatgcccccgcccatcatcatgcgc
acggcggccaccccgatgcccacccccaagtgctccccacacctggaggccctgcacggc
ctcggggactcgaggaggggcagcaacgcctcgctggaccccacgggctacgaccagaag
tccttgtccagcctccgcagctccccctgcgccaactgggccaccagcagcacctggggc
agccgccgctccagctggaacagcctgggcagggcgcccagcctcaagaagaagaaccag
tccggagagcgggaatcgctgctctccggagagggcaaaggcagcacggacgacgactcg
gacgacgccaagtccagcacgccgagccggccctcgccgccgcgccgggcggaatccctg
gagctgcccgagctgctgcgggtgccctcggtgcgccagctcggcctcggccccgccgag
ctccgcggctgcaacggcaagaccggccacggccccgccgagttcttcctcagggtggac
gggcacaaggaggacgcgctggactacgaggacgacgtggaggatagttattgctaccgg
atccgcaaagccctggagccctacaaaccccagtggtgcaagactcacgaggactggtcc
ctctacttgttctccccacagaacaggttccgagtgatgtgccagaaggtcattgcccac
aaaatgtttgaccacgtggtgctggtcttcatcttcctcaactgcatcaccatagctctg
gagagacccgacatcgaccccctgagcacggaaaggatattcctaagtgtctctaattac
atcttcactgccatcttcgtggctgaaatgatggttaaggtggtagctcttggctttttc
tctggggagaacacgtacctgcagagcagctggaacgtcctggacggagtgctggtcttt
gtctccatcattgacatcattgtgtccatggcatcagcaggaggagccaaaatcctggga
gtccttcgtgtgttgaggctcctgcggaccctgagacctctccgagtcatcagcagagcc
ccaggtctgaagctggtggtggaaaccttgatctcttccttgaggcctattgggaatatt
gttctcatctgctgtgctttcttcattatctttggtattttaggggtccagctttttaaa
ggcaagttctactactgtgatggccctgatgtcaaaaatatcaccacgaaggctgactgc
accaacgctcactacaaatgggtccggaggaagtacaacttcgacaatttggggcaggcc
ctgatgtccctgtttgtcctctcctccaaggacggctgggtgaacatcatgtacgacggg
ctggacgccgtgggcattgaccaacagcccatccagaaccacaacccttggatgctgctc
tacttcatctccttcctgctcatcgtcagcttcttcgtgctcaacatgttcgtgggggtg
gtggtggagaacttccacaagtgccggcagcaccaggaggcggaggaggcgcggcgccgg
gaggagaagcggctgcgccgcctggagaaaaagcgcaggaaagcccagcgcaggccctac
tacgctgactactcgccggccaggaggtacatccacagcctgtgcaccagccactacctc
gacctcttcatcaccttcatcatcggcgtcaacgtcatcaccatgtccatggagcactac
aaccagcccaagtccctggatgaagccctcaagtactgcaactacgtgttcaccattgtc
tttgtgttcgaggcgctgctcaagttggtggcctttggtttccggaggttttttaaggac
aggtggaaccagctggacctggccatagtcctgctgtccatcgtggggatcacgctggag
gagatcgagatgaacgctgccctgcccatcaaccccaccatcatccgcatcatgcgggtg
ctccgcatagccagagtgctgaaactgctgaaaatggccacgggcatgagagctctgctg
gacacggtggtgcaagccctgccccaggtagggaaccttggcctactttttatgctcctg
ttttttatctatgctgccctgggagtggaattgtttggcaagctggattgcagtgaggag
aatccctgtgaaggcctgagccgccacgccaccttcaccaacttcggcatggccttcctc
accctcttcagggtgtccacaggggacaactggaacgggatcatgaaggacacgctgcgg
gagtgcacgcgggaggacaagcactgcctcagctacctgcccgtcatctcccccgtctac
ttcgtcaccttcgtcctcatcgcccagttcgtgctggtcaacgtggtggtggcagtgctg
atgaagcacctggaggagagcaacaaggaggccaaggaggacgcggagatggacgccgag
atcgagctggagatgtcccgagggggcggcgggagccgggcgctgcacgggaacctggag
cacgccaagggcaagcagcaagccctgggcgctgcagcctcgctgagggcccaggactcc
cagaacctgctggcggtccggaagatctccgtgtcccgcatgcattccctgcccaacgac
agctacatgttccggcccgtggcgccggccgccgccccgctgcccctgcacgaggtggag
atggaaacctacccctgcaaagcccaaagaggatccatcacctccatccgctcccagccc
gtggctggcagctcctcgctgagggtgccctcggaggcgctgccggcggccgcgcgctgc
cccggccgcgaagggcggcagcgctggaggggcccggcgccccacggcaccccccgatct
cctgccctcagcaagctgctctgcagacaggaggccgttcagacggactcggtggacgga
cagactccagagcgcaaagacagcctgcaagcagagcctggagagcctcagccaccagca
aagcagcccccgagcagcctcacctccagccctctccattccccgctcccggccacccct
ccacgctcgcccccatcctccccacaccggcccctcggcgccctggctcggaagcacacg
tgtggccagcacggcgttcccagccggccacccagccccaccgagggctgccagggcgag
ccctcggacctggctgacgaggaggttcggcacatcaacagctcggccaaagactgggca
gaggagcgctcggaccccggcagccgctccacctcgcccttcgcctccccggccccgtcc
cccgcgcccctcaagaactgcagcacaagcagcctctcccgcaaggagaaggacttgaag
aagttctacagcaccgacagcaagggcttcctcagcaagcccagctgggccgacgagcag
cggcggcactccatcgagatctgcccctcgggcagcgccccggaccgcggcttccaggag
cccgccgaggacaagcagcggctccccggccacgtcccgccggaggccgagcacatccac
ggagcccggaggaagaagaagatgagcccgccctgcatttctatagatcctcccatggag
gacgacggagcagcggccccacgcagcaaagcctccgagaacaccctgctgcggaggaga
accccgtcctgcgagttcccggcctaccgagaatccctggagctcccggagagccgaggg
gagcaccttggcatccccaacttctccttcgagcagctggacggcggctccttgagcagc
ctctcggagctgctggacagcgcgcagtccacgccggcctccgtgggctcgcggccggac
gctgagctgcaaaagcaggagcacctccaaactgagaggggcaaagagctgctgggcacc
gctgccaagagccccctgcgcaagcagggcttggggcccgtgactgctgccacaggagac
ggcgcgggtgaccccgtatag
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integrated database retrieval system
