Lonchura striata (white-rumped munia): 110481723
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Entry
110481723 CDS
T05897
Symbol
SYMPK
Name
(RefSeq) LOW QUALITY PROTEIN: symplekin
KO
K06100
symplekin
Organism
lsr
Lonchura striata (white-rumped munia)
Pathway
lsr03015
mRNA surveillance pathway
lsr04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110481723 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
110481723 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lsr03021
]
110481723 (SYMPK)
03019 Messenger RNA biogenesis [BR:
lsr03019
]
110481723 (SYMPK)
Transcription machinery [BR:
lsr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110481723 (SYMPK)
Messenger RNA biogenesis [BR:
lsr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
110481723 (SYMPK)
U7-dependent histone pre-mRNA processing factors
110481723 (SYMPK)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
PSD4
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
110481723
NCBI-ProteinID:
XP_031363533
LinkDB
All DBs
Position
Unknown
AA seq
752 aa
AA seq
DB search
MDQYGPVVELLNQAALIGSEGKITILKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVR
KFVVGFIEEAWVGGGGHGGHQGWSHDKPDAALKKMKIGENPWWHLPCGGIRDVGRGGFRV
GGGGHGGHQGWSHDEPDAALKKMKIEPPLGEDDEDKDLEAPAVAVAKAAGAVTVPSDTDI
TAEFLQPLLTPENVANLVREGTSASGTLLGWLWGGVTCPGPRDVPNLVKEGTSASGTLLG
WLLGGCWGHSGGPEVLFRTLLREEPKEEKVAKPDAVLIKRRLSALGQGQAIAVLGAHGSA
AGLPDETPQAKRRPEPIMPATQPRLAGAGGRKKVFRLGDVLKPLSEVQVEKLKLGAVRRI
LRSERAVAASGAAQVRQQALQFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGAD
KDTEVAAPWTEETIKQCLYLYLALLPHNHKLIHELASVYTEAIADIKRTVLRVIEQPVRD
TWGHLGTLLLLVENCPKGAETLVTRCLHSLTDKGAPDRVRELYHKRLPDVRFLIPVLNGL
EKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGDGASAVSPLNPGELLIALHNIDSSKCD
MKSIIKGXXXCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQALTMYPRLGGFVMN
ILSRLIMKQVWGPKIPXNYPKIHPKTAPKIPPKSPMRTVIQALTVFPRCEHPVQALHEAV
IQTLTMYPRLGGFVMNILSRLIMKQVWGPKIL
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
atggaccagtatggaccagtggtggagctgctgaaccaggcggcgctgatcgggagcgag
gggaaaatcaccatcctgaaacaggtgcaggagctgatcatcaacaaggaccccacgctg
ctggacaacttcctggatgaaatcatcgccttccaggccgacaaatccatcgaggtgcgg
aaattcgtggtgggattcatcgaggaggcctgggtgggtggtggtggccatggtggccat
cagggatggtctcatgacaagcccgacgccgccctcaagaagatgaagatcggtgagaac
ccgtggtggcacctcccctgtggtggcatcagggatgtgggacgtggtgggttcagggtg
ggtggtggtggccatggtggccatcagggatggtctcatgacgagcccgacgccgccctc
aagaagatgaagatcgagccacccctgggcgaggatgacgaggacaaggacctggaggcg
ccggcggtggccgtggccaaagcggccggagctgtcaccgtcccctcggacaccgacatc
acggccgagttcctgcagcccctgctgacccccgagaacgtggccaacctggtcagggag
gggacatcggcctcggggacacttctggggtggctttggggtggtgtcacctgccctgga
cccagggatgtccccaacctggtcaaggaggggacatcggcctcggggacacttctgggg
tggctcttgggggggtgttggggacactctgggggacctgaggtgctcttcaggacactn
ctgcgcgaggagcccaaggaggagaaggtggccaagccggacgccgtgctcatcaagcgg
cgcctgtcggcgctgggccagggccaggccatcgccgtgctgggcgcccacggctcggcc
gcggggctgccggacgagaccccccaggccaagcgccggcccgagcccatcatgccggcc
acgcagccgcggctggcgggcgcgggcggcaggaagaaggtgttccgcctcggggacgtg
ctgaagccgctcagcgaggtgcaggtggagaagctgaagctcggcgccgtgcgccgcatc
ctgcgctccgagagggccgtggcggccagcggggccgcccaggtgcgtcagcaggcgctg
cagttcatcaagcgcatgtatgagaaggagcagctgcgcgagtacgtggagaagttcgcg
ctcaattacctgcagctcctggtgcaccccaacccgccctcggtgctcttcggcgccgac
aaggacaccgaggtggcggcgccctggaccgaggagaccatcaagcagtgcctgtacctg
tacctggccctgctgccccacaaccacaagctgatccacgagctcgcctccgtctacacc
gaggccatcgccgacatcaagcggacggtgctgcgcgtcatcgagcagccggtcagggac
acctggggacacctggggacactnctgctgctggtggagaactgccccaagggcgccgag
acgctggtgacgcgctgcctgcacagcctcaccgacaaaggtgcgccggaccgcgtcagg
gagttgtaccacaagcggctgccggacgttcgcttcctcatccccgtcctcaacgggctc
gagaagaaggaggtgatccaggcgctgcccaagctcatcaagctcaaccccatcgtggtc
aaggaggtcttcaaccgcctgctggggacgcagcacggtgacggcgcctcggccgtgtca
cccctgaaccccggggagctcctgatcgccctgcacaacatcgactcctccaagtgcgac
atgaaatccatcatcaaaggnnnnnnnnngtgcttcgcggagcggaacgtgtacacctcg
gaggtgctggcggtggtgatgcagcagctgatggagcagagcccgctgcccatgctgctg
atgcgcacggtgatccaggccctgaccatgtacccccgcctgggcggcttcgtcatgaac
atcctgtccaggctcatcatgaagcaggtctggggccccaaaatcccctgaaattacccc
aaaattcaccccaaaaccgccccaaaaatccccccgaaatccccgatgcgcacggtgatc
caggccctgaccgtgttcccccgttgtgaacatcctgtccaggctcttcatgaagcagtg
atccagaccctgaccatgtacccccgcctgggcggcttcgtcatgaacatcctgtcccgc
ctcatcatgaagcaggtctggggccccaaaatcctctga
DBGET
integrated database retrieval system
