Lonchura striata (white-rumped munia): 110481904
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Entry
110481904 CDS
T05897
Symbol
SH3TC1
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
lsr
Lonchura striata (white-rumped munia)
Brite
KEGG Orthology (KO) [BR:
lsr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
lsr04131
]
110481904 (SH3TC1)
Membrane trafficking [BR:
lsr04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
110481904 (SH3TC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_8
TPR_10
TPR_2
SH3_1
TPR_1
ARM_TT21
ARM_TT21_4th
SH3_2
TPR_NPHP3
Csd3_N
Motif
Other DBs
NCBI-GeneID:
110481904
NCBI-ProteinID:
XP_021406445
UniProt:
A0A218V2M0
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Position
4:60972886..61001431
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AA seq
1331 aa
AA seq
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MESLAAAGGTSMFSTNTIVPALEGGQDRNLEREETEQKIGRCDCKHVESNAAISTLRDGI
GMDTLQEQTECSPSEKCMNVSSRTLPNQAENFPTDISLKLTMVKRKSGCPDPRLQRQLRG
QLRLLENDNKEVMTVFSELSARLLSIHSDQDLIVVTFKTFEEIWKFLTYHSLGFINHCME
NLFLDQSFWLYSQEEEDTGIEVCINEKSLHLMYRSLLVQEGSFFVLYPDNTIQKMMVIDN
ETAYFETGAFTEEVTGGSVDSDMPMKSNASLEPLEPFHQWFLKGYSNPIDFSYKNESKSI
RKVAMGSCLAVMNYESIVSEELSFQEGDKIEILGYFIECMEWFLGRHVFTGQIGFVKTGH
VQLDLSRNIPQDLDFLEAEELSFFSKEKNLEEVVHLLKQTSITDVCSVYRIDVLEEPEFQ
KAHECEIACSPSSPGSTSKNGKIEELLKNFKNLEASQAEEPTPEGKESAVSSKTEIFPLP
EGPCFHICQEDIQASDIFEPLLLFLNRKEYESSFKCLYNFSNSFTNSMFYGFSEEEELVN
FLRLAREAAKKAGLSWALARLCFLLGRLSVKKLKFSQARVYFEEALRAVAGGFNDLYFVI
ALYTNLTVIYLTQKNQEKCTHIFDKAASLLMGIPNYICSADLESDILKYALKRTILSQNR
YAEARACFLLAKHYNVRKQHQEALPFLERFQLLLNDLGLQNNLSNNCYFKLAESYHEKCL
PHIVLSCIKVTSPQSSSTLMDSLKRIDLVIKNAPKLYGLRKLRQIFPSQIAPYLIQALSS
VFTDEEGGLCSTIYLSLAKLYSHHKQYGKAIAYMMKALDSASAKPEETINYLVLLAWLHI
LYKQYEVALGILNAVVGSAWSSPQQLGIAHNMLAIALKRTNNTKEAAESYYKALCLSEET
EIIHNQAIALANFGALCLHVAASKLAEHYFIRAVKLFSKLPIMDCGQDFIQVLLQLGCYY
VGGTEREKGRFYYEWAFLVAMEISHLESQLQAIKLLCQFYSTVAPNETQCVIYNEYQLSL
ARKMSNKVLEGQILETISQLYLSLGTQRAYRSALEYTKRSLGIFIDLQKKEKEAYAWLRA
GKIYYVLRQNELVDLYIQVAQDAALCTGDPNLGMELFEAAGDIFFNGTWEKEKAVTFYRD
RALPLALQTGNKTTELRLCNKLVELLMNLKAYEESLEYARVALILSVKLGNQLNERIAYH
RLAAIHHHLGHCELAEHFYLKALSLCSSPLEFEEETLYYVKVYLILGDIIFYDLKDPFDA
AGYYHLALAAAMDLGNKKAQLKIYTRLAVIYHNFLVDREMSLFFYQKARTFATELNVRRI
NLAPDQCYKSS
NT seq
3996 nt
NT seq
+upstream
nt +downstream
nt
atggagagtttggcagcggcaggtggcacatctatgttcagcactaacaccattgtccct
gctctggagggagggcaagacaggaacttggagagggaagaaacagagcagaaaataggc
aggtgtgactgcaaacatgtggagagcaatgctgccatcagcaccctcagagatggaatt
gggatggacacgttgcaagaacaaacggagtgttctccaagtgaaaaatgcatgaatgtc
agttcaaggacccttcccaatcaggcagagaattttccaactgatatctccttgaagtta
acaatggtaaaaagaaagagtggatgtcctgatcccaggctccaaagacagctcagaggg
cagctccgtctcctggaaaatgacaacaaggaggtgatgactgtcttcagtgagctttct
gccagactcctgtctattcacagtgatcaagatttaatagtggtaacatttaaaactttt
gaagaaatatggaagtttctaacctaccactcactgggttttataaatcattgcatggag
aatttatttctagaccagtctttttggctatactcccaagaggaggaagatacaggcatt
gaagtctgtataaatgaaaaatcattacatttgatgtacagaagtctgctagtacaggaa
ggatctttttttgttttatatcctgataatacaatacaaaagatgatggttatagacaat
gaaacagcttattttgagactggggcttttactgaagaagtaacaggtggatctgtggat
agtgacatgcccatgaagtctaatgcttccctggagccattggagcctttccatcagtgg
tttcttaaagggtattctaatcccattgatttttcatataaaaatgaatctaaatcgatc
agaaaagttgcaatgggatcctgtctagctgtgatgaattatgagagtattgtgtcagaa
gaactgagtttccaggaaggggacaaaattgagatccttggctacttcattgaatgcatg
gaatggtttcttggaagacatgtgtttactggccaaataggttttgtaaagacaggacat
gttcaactggacttatctagaaatataccacaagatctggattttcttgaggcagaagag
ctatcttttttttcaaaagaaaagaatttggaagaagtagtacatttgttgaaacaaacc
tccatcacagatgtttgctctgtgtacagaatagatgtattagaagaacctgaatttcag
aaagctcatgaatgtgaaattgcatgctcaccttctagtccaggatccactagcaagaat
ggcaagatagaagaattgctgaagaacttcaagaatttggaggccagtcaagctgaagag
ccaactcctgaagggaaggaatctgctgtctcttcaaagactgaaatatttcctctacct
gaagggccttgtttccacatatgtcaagaagatattcaagcatctgacatctttgagcca
ttgttactcttcttaaataggaaagagtatgagagcagcttcaaatgtctgtataatttc
tctaattcatttacaaatagcatgttttatggattttctgaagaagaagaactggttaat
tttttaagattagcaagggaagcagcaaagaaagcaggtctgtcctgggcactagcaagg
ctgtgttttctcttaggcaggctcagtgtcaaaaaactgaagttttcccaagctcgtgtg
tattttgaggaagcattgagagcagtagctggagggtttaatgatttgtactttgtaatt
gctctttatacaaatctaacagtcatctacttgacccagaaaaatcaagaaaagtgtact
catatttttgacaaggctgcatctcttctcatgggaattcccaactacatttgcagtgct
gacctggagtcagatatactgaagtatgctctgaagaggacaattttgagccagaataga
tacgcagaggcaagggcatgctttctgctggcaaaacattacaatgtacgcaaacaacac
caagaggcactgccattcttggaaaggtttcagctgttgctcaatgacctgggtttacaa
aacaatttatccaacaactgttacttcaaactggcagagtcctaccacgaaaagtgtttg
ccacatattgtgttaagttgcataaaggtgacctctccccagagctccagtaccttaatg
gattccctgaaaaggattgatttagttatcaaaaatgctcccaaactatatggcctgaga
aaactcagacaaatattcccatcccaaattgcaccttacctcatacaggcactttcttct
gtctttactgatgaggagggaggactgtgcagcactatctatctcagcttagcaaagctg
tacagccaccacaaacagtatggaaaagccattgcttacatgatgaaagcactggactct
gcttctgctaagccagaggaaactatcaactatttggttttacttgcttggcttcacatt
ctttacaagcaatatgaagtggctttaggtattttaaatgctgttgtaggctctgcatgg
agcagtcctcagcaacttggcatcgctcataacatgcttgccattgctttgaaaaggaca
aacaacacaaaagaagctgctgagagctactacaaggcactgtgtctttcagaagagact
gagataatccacaaccaagccatagccctggctaattttggggcactctgcctgcatgta
gcagccagcaagctggcagaacattattttatcagagcagtcaagctattctccaagctt
ccaattatggactgtggtcaagattttatccaagtcctccttcagctgggatgttattat
gttggtggaactgaaagggagaaaggaaggttttactatgaatgggctttcttagttgca
atggagataagtcatctggagagtcaactacaagcaattaaactgctgtgtcagttctac
agtacagttgctcccaatgagactcagtgtgtcatctacaatgaatatcaactatcttta
gccagaaagatgtccaacaaggttctggagggacaaattttggaaaccattagtcagctc
tatttgtctttaggaacacaaagggcctacaggtcagctctggaatataccaaaagaagc
cttggaatatttatagatctccagaaaaaagagaaggaggcatatgcttggctccgggca
ggaaagatatattatgttctgaggcagaacgagcttgtggatctttatattcaggttgct
caggatgctgctctttgcacaggagatccaaatctaggaatggaattgtttgaagctgct
ggagacatatttttcaatggtacttgggaaaaggagaaagcagtgactttctacagggac
agggctctcccgcttgctcttcagactggcaacaaaaccactgaactcagattatgcaat
aaattggtggaattgctgatgaatctgaaggcttatgaggaaagtctggaatatgcaaga
gtagctctcatcctcagtgtaaaattgggaaatcagctaaatgaaagaatagcttaccat
cgcctggcagccatccatcaccatttgggtcactgtgaactagctgaacatttctattta
aaggccttgtccctctgttcctctcctttggagtttgaggaagaaacactctattatgtc
aaggtgtacttgatcttaggagatattatattctatgaccttaaggacccctttgatgca
gctggttattaccacttggcacttgctgctgccatggacctgggcaataaaaaagctcaa
ctgaagatttacaccagacttgctgtgatctaccataatttccttgtggatcgggaaatg
tctctcttcttctaccaaaaggcaagaacctttgcaacagagctgaatgtaaggagaata
aatttagctcctgatcagtgttacaagagttcataa
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